Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060419.seq
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 49 3e-06
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 48 4e-06
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 47 9e-06
SB_38092| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2) 29 2.0
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_21984| Best HMM Match : DUF624 (HMM E-Value=3) 28 4.6
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18) 28 6.1
SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 27 8.0
>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +2
Query: 401 HTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPGSPA 520
H++HW RKGLRIHDNPALR+ +++ TFR V+I+D S A
Sbjct: 19 HSIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVA 58
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 505 SRFASSSNVGINKWRFLLQ 561
++ +SSN+G+N WRFLLQ
Sbjct: 54 TKSVASSNIGLNLWRFLLQ 72
>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPGS 514
G + +HWFRK LR+HDNPAL +G+ + F V+I+DP +
Sbjct: 351 GNNVIHWFRKDLRLHDNPALLDGLKNCRAFYGVYILDPNN 390
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/46 (45%), Positives = 32/46 (69%)
Frame = +2
Query: 371 MSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
MS P +T +T+HWFRK LR+HDNP+L + + + +F V+ +DP
Sbjct: 710 MSLPPKT--HNTMHWFRKDLRLHDNPSLLKALSGSQSFYGVYFLDP 753
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIID 505
G +VHWFRK LR+HDNP+L + + TF ++++D
Sbjct: 223 GCTSVHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLD 259
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPGS 514
G ++HWFRK LR+HDNPAL E + F V+ +DP S
Sbjct: 196 GISSMHWFRKDLRLHDNPALLESFKNCQAFYGVYFLDPAS 235
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIID 505
G +VHWFRK LR+HDNP+L + + TF ++++D
Sbjct: 693 GCTSVHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLD 729
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 398 KHT-VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPGSPAL 523
+HT HWFRK LR+HDNPAL++ + +A F VF++ P++
Sbjct: 5 RHTSCHWFRKDLRLHDNPALKDALDNADCFYGVFVLSNFHPSI 47
>SB_38092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAV 478
++ A P+ P + TP+ H P+ +PG + WFR+ I + + ++A+
Sbjct: 15 EVPAKPDQRPSSAVLTKTPSDHEHKETPK-SPGPLSKRWFRQQFGIRNEDTRKASKVEAM 73
Query: 479 T 481
T
Sbjct: 74 T 74
>SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)
Length = 607
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 317 ETLPPPSAQAHTPARPTHMS-APRRTPGKHT 406
ETL PPSA P P H APR +HT
Sbjct: 550 ETLLPPSATVSWPGTPGHRGCAPRNRATRHT 580
>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +1
Query: 310 SPRNTATTKCSSSHA--GQAYSYVRTSTYAG*THRALVPERIANPR*PRPSRGHY---RR 474
+P T +HA +A+ + T T T V +RI PR PRP+ Y RR
Sbjct: 79 TPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPTRARRVHQRIQTPRTPRPTHAEYTHARR 138
Query: 475 CH 480
H
Sbjct: 139 VH 140
>SB_21984| Best HMM Match : DUF624 (HMM E-Value=3)
Length = 221
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 564 TLQ*ESPFVYANV*RAGEPGSII--KTHRNVTASIMPSRR 451
T++ E+PF+Y G P ++ K H N T ++ P+ R
Sbjct: 37 TIESEAPFLYLATSNNGAPDRVLRDKVHSNATIALAPTLR 76
>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +1
Query: 310 SPRNTATTKCSSSHA--GQAYSYVRTSTYAG*THRALVPERIANPR*PRPSRGHY---RR 474
+P T +HA +A+ + T T T V +RI PR PRP+ Y RR
Sbjct: 79 TPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPTRARRVHQRIQTPRTPRPTHAEYTHARR 138
Query: 475 CH 480
H
Sbjct: 139 VH 140
>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
Length = 542
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 495 KTHRNVTASIMPSRRAGL-SWIRNPFRNQCTVCLPGV 388
KT R + S +RR G SW+ N R+ CTV G+
Sbjct: 231 KTMRALLMSFGNTRRDGTDSWVSNQCRHSCTVTYGGL 267
>SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 293 ETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHT 406
+ K AP T PP ++HT R T S R+P K T
Sbjct: 7 DDKCPKAPNT--PPITKSHTTERKTTPSTSTRSPTKST 42
>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
+ +AA + PP Q +P RP++++A + P
Sbjct: 156 RRTAARSSPSPPKRQGRSPGRPSNVTAEKNEP 187
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +2
Query: 287 LIETKMSAAPETLPPPSAQAHTP--ARPTH---MSAPRRTP 394
LI+ + P PP S +HTP + P+H +S P TP
Sbjct: 369 LIQYNPVSTPSNTPPVSTPSHTPPVSTPSHTPPVSTPSHTP 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,350
Number of Sequences: 59808
Number of extensions: 344410
Number of successful extensions: 1125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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