Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060419.seq
         (564 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    77   5e-16
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    35   0.002
AY146758-1|AAO12073.1|  289|Anopheles gambiae odorant-binding pr...    24   3.0  
AJ618930-1|CAF02010.2|  273|Anopheles gambiae odorant-binding pr...    24   3.0  
AF393485-1|AAL60410.1|  289|Anopheles gambiae odorant binding pr...    24   3.0  
AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding pr...    24   3.9  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   9.1  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 76.6 bits (180), Expect = 5e-16
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +2

Query: 398 KHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
           KHTVHWFRKGLR+HDNPALREG+  A TFRCVFIIDP
Sbjct: 4   KHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDP 40



 Score = 41.5 bits (93), Expect = 2e-05
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 511 FASSSNVGINKWRFLLQC 564
           FA SSNVGINKWRFLLQC
Sbjct: 42  FAGSSNVGINKWRFLLQC 59


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 401 HTVHWFRKGLRIHDNPALREGI 466
           + + WFR GLR+HDNP+L E +
Sbjct: 4   NNILWFRHGLRLHDNPSLLEAL 25


>AY146758-1|AAO12073.1|  289|Anopheles gambiae odorant-binding
           protein AgamOBP30 protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
 Frame = -3

Query: 535 CQRLKSWRTWIYYKDA-SECDSVYNALSKG------GVIVDS-QSF--PEPMHGVFTRRT 386
           C RL  +  +IY  DA ++C      L+ G      GV   S +SF  P+P    + RRT
Sbjct: 66  CARLAVYNKFIYPNDAETQCMVRCMGLNLGWWNDTHGVQEASMRSFFHPDPNDCDYERRT 125

Query: 385 SRCGHMSRPGR 353
            RC H  R  R
Sbjct: 126 YRCLHSQRLDR 136


>AJ618930-1|CAF02010.2|  273|Anopheles gambiae odorant-binding
           protein OBPjj83c protein.
          Length = 273

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
 Frame = -3

Query: 535 CQRLKSWRTWIYYKDA-SECDSVYNALSKG------GVIVDS-QSF--PEPMHGVFTRRT 386
           C RL  +  +IY  DA ++C      L+ G      GV   S +SF  P+P    + RRT
Sbjct: 50  CARLAVYNKFIYPNDAETQCMVRCMGLNLGWWNDTHGVQEASMRSFFHPDPNDCDYERRT 109

Query: 385 SRCGHMSRPGR 353
            RC H  R  R
Sbjct: 110 YRCLHSQRLDR 120


>AF393485-1|AAL60410.1|  289|Anopheles gambiae odorant binding
           protein 1 protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
 Frame = -3

Query: 535 CQRLKSWRTWIYYKDA-SECDSVYNALSKG------GVIVDS-QSF--PEPMHGVFTRRT 386
           C RL  +  +IY  DA ++C      L+ G      GV   S +SF  P+P    + RRT
Sbjct: 66  CARLAVYNKFIYPNDAETQCMVRCMGLNLGWWNDTHGVQEASMRSFFHPDPNDCDYERRT 125

Query: 385 SRCGHMSRPGR 353
            RC H  R  R
Sbjct: 126 YRCLHSQRLDR 136


>AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP5 protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 346 SLSTWWWQCFW 314
           S S WWW+ +W
Sbjct: 4   SRSCWWWRWWW 14


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 129  FQLSLKNLVIEHNVKTAPSRTFRINY 52
            F  +  ++V   NV+T P+ TF+ N+
Sbjct: 2109 FSYNADSMVETMNVRTDPTHTFQRNF 2134


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,042
Number of Sequences: 2352
Number of extensions: 11341
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)