Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060419.seq
(564 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like cryptoc... 63 7e-10
D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein. 63 7e-10
D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein. 63 7e-10
BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1 (photoly... 63 7e-10
EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like cryptoc... 57 5e-08
BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2 (photoly... 57 5e-08
AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein. 57 5e-08
AJ012793-1|CAB42642.1| 576|Homo sapiens lymphocyte adaptor prot... 34 0.40
AF055581-1|AAC71695.1| 575|Homo sapiens adaptor protein Lnk pro... 34 0.40
BC063835-1|AAH63835.1| 615|Homo sapiens VGF nerve growth factor... 31 2.1
BC015937-1|AAH15937.1| 479|Homo sapiens poly(A) binding protein... 31 2.1
AF013758-1|AAC39697.2| 479|Homo sapiens polyadenylate binding p... 31 2.1
AC004876-3|AAD45830.1| 615|Homo sapiens WUGSC:H_DJ0747G18.3 pro... 31 2.1
Y12661-1|CAA73210.1| 616|Homo sapiens neuro-endocrine specific ... 31 3.7
U27266-1|AAB86737.1| 477|Homo sapiens myosin binding protein H ... 30 4.9
BC044226-1|AAH44226.1| 477|Homo sapiens myosin binding protein ... 30 4.9
BC011624-1|AAH11624.1| 866|Homo sapiens interleukin 17 receptor... 30 4.9
L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain p... 30 6.5
D10250-1|BAA01095.1| 2783|Homo sapiens alpha-fetoprotein enhance... 30 6.5
AC004943-1|AAC79153.1| 2553|Homo sapiens unknown protein. 30 6.5
L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein. 29 8.5
BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein. 29 8.5
BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a, sub... 29 8.5
BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a, sub... 29 8.5
AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein. 29 8.5
>EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like
cryptochrome 1 protein.
Length = 586
Score = 62.9 bits (146), Expect = 7e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKGLR+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
Score = 40.3 bits (90), Expect = 0.005
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQC 564
FA SSNVGIN+WRFLLQC
Sbjct: 41 FAGSSNVGINRWRFLLQC 58
>D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein.
Length = 586
Score = 62.9 bits (146), Expect = 7e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKGLR+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
Score = 40.3 bits (90), Expect = 0.005
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQC 564
FA SSNVGIN+WRFLLQC
Sbjct: 41 FAGSSNVGINRWRFLLQC 58
>D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein.
Length = 586
Score = 62.9 bits (146), Expect = 7e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKGLR+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
Score = 40.3 bits (90), Expect = 0.005
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQC 564
FA SSNVGIN+WRFLLQC
Sbjct: 41 FAGSSNVGINRWRFLLQC 58
>BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1
(photolyase-like) protein.
Length = 586
Score = 62.9 bits (146), Expect = 7e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKGLR+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
Score = 40.3 bits (90), Expect = 0.005
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQC 564
FA SSNVGIN+WRFLLQC
Sbjct: 41 FAGSSNVGINRWRFLLQC 58
>EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like
cryptochrome 2 protein.
Length = 593
Score = 56.8 bits (131), Expect = 5e-08
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 APRRTPGKHT---VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
AP PG + VHWFRKGLR+HDNPAL + A RCV+I+DP
Sbjct: 12 APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDP 58
Score = 35.1 bits (77), Expect = 0.17
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQ 561
FA+SS+VGIN+WRFLLQ
Sbjct: 60 FAASSSVGINRWRFLLQ 76
>BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2
(photolyase-like) protein.
Length = 593
Score = 56.8 bits (131), Expect = 5e-08
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 APRRTPGKHT---VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
AP PG + VHWFRKGLR+HDNPAL + A RCV+I+DP
Sbjct: 12 APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDP 58
Score = 35.1 bits (77), Expect = 0.17
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQ 561
FA+SS+VGIN+WRFLLQ
Sbjct: 60 FAASSSVGINRWRFLLQ 76
>AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein.
Length = 589
Score = 56.8 bits (131), Expect = 5e-08
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 APRRTPGKHT---VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
AP PG + VHWFRKGLR+HDNPAL + A RCV+I+DP
Sbjct: 8 APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDP 54
Score = 35.1 bits (77), Expect = 0.17
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 511 FASSSNVGINKWRFLLQ 561
FA+SS+VGIN+WRFLLQ
Sbjct: 56 FAASSSVGINRWRFLLQ 72
>AJ012793-1|CAB42642.1| 576|Homo sapiens lymphocyte adaptor protein
(Lnk) protein.
Length = 576
Score = 33.9 bits (74), Expect = 0.40
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLR 433
K A+PE P P+A AR + AP R PG + FR+ LR
Sbjct: 99 KAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRSLR 143
>AF055581-1|AAC71695.1| 575|Homo sapiens adaptor protein Lnk
protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.40
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLR 433
K A+PE P P+A AR + AP R PG + FR+ LR
Sbjct: 99 KAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRSLR 143
>BC063835-1|AAH63835.1| 615|Homo sapiens VGF nerve growth factor
inducible protein.
Length = 615
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 230 KLLLAMNLVFSVIRGCK*ELIETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
KL L + V S+I + E + K +A PE +PPP A PA PTH+ +P+ P
Sbjct: 461 KLHLPADDVVSIIEEVE-EKRKRKKNAPPEPVPPPRA---APA-PTHVRSPQPPP 510
>BC015937-1|AAH15937.1| 479|Homo sapiens poly(A) binding protein
interacting protein 1 protein.
Length = 479
Score = 31.5 bits (68), Expect = 2.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPTHMSAPRRTP 394
P T PPP AQ PA P S P P
Sbjct: 62 PRTTPPPGAQCEVPASPQRPSRPGALP 88
>AF013758-1|AAC39697.2| 479|Homo sapiens polyadenylate binding
protein-interacting protein-1 protein.
Length = 479
Score = 31.5 bits (68), Expect = 2.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPTHMSAPRRTP 394
P T PPP AQ PA P S P P
Sbjct: 62 PRTTPPPGAQCEVPASPQRPSRPGALP 88
>AC004876-3|AAD45830.1| 615|Homo sapiens WUGSC:H_DJ0747G18.3
protein.
Length = 615
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 230 KLLLAMNLVFSVIRGCK*ELIETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
KL L + V S+I + E + K +A PE +PPP A PA PTH+ +P+ P
Sbjct: 461 KLHLPADDVVSIIEEVE-EKRKRKKNAPPEPVPPPRA---APA-PTHVRSPQPPP 510
>Y12661-1|CAA73210.1| 616|Homo sapiens neuro-endocrine specific
protein VGF protein.
Length = 616
Score = 30.7 bits (66), Expect = 3.7
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +2
Query: 230 KLLLAMNLVFSVIRGCK*ELIETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
KL L + V S+I + E K A PE +PPP A PA PTH+ +P+ P
Sbjct: 462 KLHLPADDVVSIIEEVE-EKRNRKKKAPPEPVPPPRA---APA-PTHVRSPQPPP 511
>U27266-1|AAB86737.1| 477|Homo sapiens myosin binding protein H
protein.
Length = 477
Score = 30.3 bits (65), Expect = 4.9
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALR 457
IE S AP P + TP T + R K + W + + I NP R
Sbjct: 374 IERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNKMEIQGNPKYR 429
>BC044226-1|AAH44226.1| 477|Homo sapiens myosin binding protein H
protein.
Length = 477
Score = 30.3 bits (65), Expect = 4.9
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALR 457
IE S AP P + TP T + R K + W + + I NP R
Sbjct: 374 IERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNKMEIQGNPKYR 429
>BC011624-1|AAH11624.1| 866|Homo sapiens interleukin 17 receptor A
protein.
Length = 866
Score = 30.3 bits (65), Expect = 4.9
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 526 LKSWRTW-IYYKDASECDSVYNALSKGGVIVDSQSFPEPMHGVFTRRTSRCGHMSRPGRR 350
L +R W ++ D EC+++Y+A + +D + F EP+ T R + PG +
Sbjct: 571 LDRFRDWQVHCPDWFECENLYSADDQDAPSLDEEVFEEPLLPPGTGIVKRAPLVREPGSQ 630
Query: 349 VSLS 338
L+
Sbjct: 631 ACLA 634
>L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain
protein protein.
Length = 3703
Score = 29.9 bits (64), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPTHMSAPRR 388
P++ P PS +H P +P H S P++
Sbjct: 2495 PQSSPSPSQLSHLPLKPLHTSTPQQ 2519
>D10250-1|BAA01095.1| 2783|Homo sapiens alpha-fetoprotein enhancer
binding protein protein.
Length = 2783
Score = 29.9 bits (64), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPTHMSAPRR 388
P++ P PS +H P +P H S P++
Sbjct: 1581 PQSSPSPSQLSHLPLKPLHTSTPQQ 1605
>AC004943-1|AAC79153.1| 2553|Homo sapiens unknown protein.
Length = 2553
Score = 29.9 bits (64), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPTHMSAPRR 388
P++ P PS +H P +P H S P++
Sbjct: 1345 PQSSPSPSQLSHLPLKPLHTSTPQQ 1369
>L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein.
Length = 464
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 311 APETLPPPSAQAHTPARPTHMSAPRRTPGKHTVH 412
AP PPPSA H A H +AP P VH
Sbjct: 361 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVH 394
>BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein.
Length = 481
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 311 APETLPPPSAQAHTPARPTHMSAPRRTPGKHTVH 412
AP PPPSA H A H +AP P VH
Sbjct: 361 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVH 394
>BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 311 APETLPPPSAQAHTPARPTHMSAPRRTPGKHTVH 412
AP PPPSA H A H +AP P VH
Sbjct: 361 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVH 394
>BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 311 APETLPPPSAQAHTPARPTHMSAPRRTPGKHTVH 412
AP PPPSA H A H +AP P VH
Sbjct: 361 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVH 394
>AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein.
Length = 464
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 311 APETLPPPSAQAHTPARPTHMSAPRRTPGKHTVH 412
AP PPPSA H A H +AP P VH
Sbjct: 361 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVH 394
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,923,755
Number of Sequences: 237096
Number of extensions: 1588562
Number of successful extensions: 5547
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5523
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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