Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060419.seq
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21323-11|AAA62556.1| 292|Caenorhabditis elegans Hypothetical p... 32 0.33
U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical pr... 32 0.33
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 31 0.57
Z68882-6|CAA93107.3| 406|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z68882-5|CAD89726.1| 407|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 27 9.3
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 27 9.3
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 27 9.3
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 27 9.3
>U21323-11|AAA62556.1| 292|Caenorhabditis elegans Hypothetical
protein C45G9.4 protein.
Length = 292
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQA-HTPARPTHMSAPRRTPGKHTVHWFRK 424
+M AP TLPPPSA++ H P P ++ R ++T + K
Sbjct: 160 QMVTAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSK 202
>U21323-8|AAA62552.1| 294|Caenorhabditis elegans Hypothetical
protein C45G9.9 protein.
Length = 294
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQA-HTPARPTHMSAPRRTPGKHTVHWFRK 424
+M AP TLPPPSA++ H P P ++ R ++T + K
Sbjct: 162 QMVTAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSK 204
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
K+ A+ + PP + A P RP+ APRR P
Sbjct: 215 KIGASSTSAPPKTTAAGAPKRPSSAVAPRRAP 246
>Z68882-6|CAA93107.3| 406|Caenorhabditis elegans Hypothetical
protein C47E12.4c protein.
Length = 406
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 304 VSSPRNTATTKCSSSHAGQAYSYVRTS 384
VSS NTATT SSS+ Q ++ RTS
Sbjct: 14 VSSSSNTATTSTSSSNTSQKWATSRTS 40
>Z68882-5|CAD89726.1| 407|Caenorhabditis elegans Hypothetical
protein C47E12.4b protein.
Length = 407
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 304 VSSPRNTATTKCSSSHAGQAYSYVRTS 384
VSS NTATT SSS+ Q ++ RTS
Sbjct: 14 VSSSSNTATTSTSSSNTSQKWATSRTS 40
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 302 MSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKH 403
M P PPPS P P+ M PR PG +
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY 159
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 302 MSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKH 403
M P PPPS P P+ M PR PG +
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY 159
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARPT 367
+ T SA P +LPP S HT P+
Sbjct: 640 VSTSSSAQPVSLPPGSVHLHTSIAPS 665
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 308 AAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRK 424
AAP PPP+A A P P P ++P + V +R+
Sbjct: 132 AAPPPPPPPAAAAAAPISPKAAPTP-QSPAPNRVPHYRQ 169
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARPT 367
+ T SA P +LPP S HT P+
Sbjct: 640 VSTSSSAQPVSLPPGSVHLHTSIAPS 665
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 296 TKMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
T M + P T P+ TP PT M + TP
Sbjct: 404 TTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTP 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,346
Number of Sequences: 27780
Number of extensions: 248906
Number of successful extensions: 815
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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