Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060419.seq
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     78   7e-17
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 77.8 bits (183), Expect = 7e-17
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = +2

Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
           GKHTVHWFRKGLR+HDNP+LREG+  A TFRCVF++DP
Sbjct: 20  GKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDP 57



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 511 FASSSNVGINKWRFLLQC 564
           FA S+N+GINKWRFLLQC
Sbjct: 59  FAGSTNIGINKWRFLLQC 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 501 IIKTHRNVTASIMPSR 454
           +I+  RNV  S+MP+R
Sbjct: 906 LIRPERNVRQSMMPTR 921


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,061
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)