Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060419.seq
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ...    43   1e-04
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH...    37   0.008
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic...    34   0.057
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue...    34   0.075
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue...    34   0.075
At5g43670.1 68418.m05337 transport protein, putative similar to ...    32   0.30 
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    30   0.93 
At3g11590.1 68416.m01416 expressed protein                             29   1.6  
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    29   2.8  
At2g35900.1 68415.m04407 expressed protein                             29   2.8  
At1g12810.1 68414.m01488 proline-rich family protein contains pr...    27   6.5  
At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   8.7  

>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
           photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
           (Nucleic Acids Res. 26 (2), 638-644 (1998))
          Length = 556

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +2

Query: 395 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
           G  ++ WFRKGLR+HDNPAL      +     VF+IDP
Sbjct: 23  GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDP 60


>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
           identical to photolyase/blue light photoreceptor PHR2
           [Arabidopsis thaliana] GI:3319288; contains Pfam domain,
           PF00875: deoxyribodipyrimidine photolyase
          Length = 447

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 290 IETKMSAAPETLPPP-SAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGI 466
           I  K + A   L  P S     P  P+  +A RR      V WFR  LR+HDN  L    
Sbjct: 82  ISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRRA----AVVWFRNDLRVHDNECLNSAN 137

Query: 467 IDAVTFRCVFIIDP 508
            + V+   V+  DP
Sbjct: 138 DECVSVLPVYCFDP 151


>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
           to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
           similar to Deoxyribodipyrimidine photolyase (DNA
           photolyase) (Photoreactivating
           enzyme)(SP:Q55081){Synechocystis sp.}
          Length = 526

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 356 ARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
           A P+  S  R+  G  T+ WFR  LR+ DN AL +    + T   V+ +DP
Sbjct: 28  ALPSSSSVKRKGKGV-TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDP 77


>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
           light photoreceptor (PHH1) 97% identical  to photolysase
           (PHH1)  (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
           (SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
           gene; contains Pfam profiles PF03441: FAD binding domain
           of DNA photolyase and PF00875: deoxyribodipyrimidine
           photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
           GI:18026275
          Length = 612

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 398 KHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
           K T+ WFR+ LRI DNPAL     +   F  VFI  P
Sbjct: 5   KKTIVWFRRDLRIEDNPALAAAAHEGSVFP-VFIWCP 40


>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
           light photoreceptor (PHH1) 97% identical  to photolysase
           (PHH1)  (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
           (SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
           gene; contains Pfam profiles PF03441: FAD binding domain
           of DNA photolyase and PF00875: deoxyribodipyrimidine
           photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
           GI:18026275
          Length = 612

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 398 KHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
           K T+ WFR+ LRI DNPAL     +   F  VFI  P
Sbjct: 5   KKTIVWFRRDLRIEDNPALAAAAHEGSVFP-VFIWCP 40


>At5g43670.1 68418.m05337 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 794

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -3

Query: 520 SWRTWIYYKDASECDSVYNALSKGGVIVDSQSFPE-PMHGVFTRRTSRCGHMSRPGRRVS 344
           SW +W   K  S+C+S+   LS   +      F E P         SRCG +  P  RV 
Sbjct: 15  SWNSWPTTK--SDCESLVVPLSI--MYTPLMHFSELPTIPYDPLICSRCGAVLNPYARVD 70

Query: 343 LSTWWWQCFWGC*HFCFYKLLFTSS 269
             +  W C      FCF+K LF  S
Sbjct: 71  YQSRIWSC-----PFCFHKNLFPRS 90


>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 395 GKHTVHWFRKGLRIHDNPALREGI 466
           G  ++ WFR+ LR+ DNPAL   +
Sbjct: 11  GGCSIVWFRRDLRVEDNPALAAAV 34


>At3g11590.1 68416.m01416 expressed protein
          Length = 622

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 323 LPPPSAQAHTPARPTHMSAPRRTP 394
           LPPP +  H+ + P H+S P  +P
Sbjct: 135 LPPPRSSVHSGSLPPHLSDPSHSP 158


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKH 403
           K S +  +LPPP+ +   P  P+H S+    P  H
Sbjct: 140 KKSPSTPSLPPPTPKKSPPPPPSHHSSSPSNPPHH 174


>At2g35900.1 68415.m04407 expressed protein
          Length = 192

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 516 GEPGSIIKTHRNVTASIMPSRRAGLSWIRNPFRNQCTVCLPGVRRGAD 373
           G+P  +++++   T   +  +  G S + N F ++  +  PG+RR  D
Sbjct: 69  GKPSEVVQSNTEHTEEDVTDQMVGRSALPNQFEDKNPLNFPGLRRDVD 116


>At1g12810.1 68414.m01488 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 129

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 314 PETLPPPSAQAHTPARPTHMSAP 382
           PE+ PPP  Q+H P  P + SAP
Sbjct: 8   PESYPPPGYQSHYPP-PGYPSAP 29


>At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 763

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 562 IAIGISICLCQRLKSWRTWIYYKDASECDSVYNALSKGGVI 440
           +A G+S+CL    K  R      D  EC+ + + + K GV+
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVL 248


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 305 SAAPETLPPPSAQAHTPARP 364
           S  PE+LPPPS ++ +P  P
Sbjct: 151 SPPPESLPPPSPESPSPPSP 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,055
Number of Sequences: 28952
Number of extensions: 222089
Number of successful extensions: 696
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)