Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060418.seq
         (552 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    28   0.062
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   9.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 27.9 bits (59), Expect = 0.062
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 470 AVTXRCVFIIXXXFAKLFKTVG*NKWR 550
           A T RCVF++   FA     VG NKWR
Sbjct: 42  ARTFRCVFVLDPWFAG-SSNVGINKWR 67



 Score = 25.8 bits (54), Expect = 0.25
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 426 MRXHDNPGLRDGL 464
           +R HDNP LR+GL
Sbjct: 27  LRLHDNPSLREGL 39



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 397 KHTVHWXRK 423
           KH VHW R+
Sbjct: 17  KHMVHWFRR 25


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 153 QDSDVYVHXTQLYLHKQKCIANIIFL 230
           QDS  Y++ ++L   K     N IFL
Sbjct: 2   QDSFQYINRSELITSKIVSFVNSIFL 27


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 187 FIYINKSVLLILYF*AFTGYELXLQC 264
           FI+ N  +L +L    FT + L L C
Sbjct: 186 FIFFNMHLLFLLCLDYFTLHLLFLPC 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,096
Number of Sequences: 336
Number of extensions: 1939
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)