Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060418.seq
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    28   5.7  
01_05_0466 - 22488026-22488427                                         27   10.0 

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 292 ETKXSXAPETLPXPSAQAHXPARPXHMSAPRRT 390
           E   S +P  LP P  ++H    P H  APR+T
Sbjct: 181 EGSGSQSPFLLPSPRYKSHSHRIPSHPIAPRKT 213


>01_05_0466 - 22488026-22488427
          Length = 133

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 271 RMEIGAIETKXSXAPETLPXPSAQAHXPARPXHMSAPRRTP 393
           R+ +GA       APE +P P   +  PA P  +   RR P
Sbjct: 72  RLNLGAAALHAGGAPEVVPRPLPPS--PASPRRLRRGRRLP 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,476,919
Number of Sequences: 37544
Number of extensions: 186630
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)