Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060418.seq
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   28   5.8  
SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)                     27   7.7  

>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 271 RMEIGAIETKXSXAPETLPXPSAQAHXPARPXHMSAPRRTPGK 399
           ++   A +   S    +   P  + H PARP     PRRT  K
Sbjct: 609 KLRFNAGDKATSQGERSKRCPRGEVHHPARPFSADGPRRTVPK 651


>SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)
          Length = 177

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 331 PSAQAHXPARPXHMSAPRRTPGK 399
           P  + H PARP     PRRT  K
Sbjct: 140 PRGEVHHPARPFSADGPRRTVPK 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,037
Number of Sequences: 59808
Number of extensions: 229574
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)