Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060418.seq
         (552 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    29   0.10 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   8.8  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +2

Query: 470 AVTXRCVFIIXXXFAKLFKTVG*NKWR 550
           A T RCVFII   FA     VG NKWR
Sbjct: 29  ARTFRCVFIIDPWFAG-SSNVGINKWR 54



 Score = 25.8 bits (54), Expect = 0.95
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 426 MRXHDNPGLRDGL 464
           +R HDNP LR+GL
Sbjct: 14  LRLHDNPALREGL 26



 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 397 KHTVHWXRKRCEXTITPAFXMAYR 468
           KHTVHW RK       PA     R
Sbjct: 4   KHTVHWFRKGLRLHDNPALREGLR 27


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 129  FQLSLKNLVIEHNVKTAPSRTFRINY 52
            F  +  ++V   NV+T P+ TF+ N+
Sbjct: 2109 FSYNADSMVETMNVRTDPTHTFQRNF 2134


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,581
Number of Sequences: 2352
Number of extensions: 7578
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51301854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)