Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060418.seq
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     28   0.055
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 461 LIDAVTXRCVFIIXXXFAKLFKTVG*NKWR 550
           L  A T RCVF++   FA     +G NKWR
Sbjct: 43  LAGASTFRCVFVLDPWFAG-STNIGINKWR 71



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 394 GKHTVHWXRK 423
           GKHTVHW RK
Sbjct: 20  GKHTVHWFRK 29



 Score = 25.8 bits (54), Expect = 0.29
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 426 MRXHDNPGLRDGL 464
           +R HDNP LR+GL
Sbjct: 31  LRLHDNPSLREGL 43


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 477  VTASISHXEGRGYRXFASFPXPMHGVFTRRTSRCGHMXRPGR 352
            VT S    EG+  +  A  P   + V  R TS  GH+ RP R
Sbjct: 1289 VTGSTRVGEGQSSKVAAQVPT--NRVPARITSFGGHVVRPWR 1328


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 477  VTASISHXEGRGYRXFASFPXPMHGVFTRRTSRCGHMXRPGR 352
            VT S    EG+  +  A  P   + V  R TS  GH+ RP R
Sbjct: 1285 VTGSTRVGEGQSSKVAAQVPT--NRVPARITSFGGHVVRPWR 1324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,864
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)