Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060417.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    30   0.36 
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   3.3  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   5.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   5.8  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    26   5.8  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 509 RNTKARQVCIATSPLNISEASISKQSEPAKKK 604
           +N+K+R V + +SP N+   ++S   +  KKK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKK 592


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 496 LDSFVITTPIFKWL---DILTTRWQRYNNTTHLIFSRLFNFLDNSESL 362
           L++ +I     +W+   D + TR++   +T H+IF++  N  DN E++
Sbjct: 3   LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKIN--DNPENM 48


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 551 LNISEASISKQSEPAKKKLLV 613
           L+I E S+SK+SEP+   +LV
Sbjct: 582 LSILEGSVSKRSEPSMDSILV 602


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 437 SCSQDVQPLENRCSNDKAIQVAPARNTKARQVCIATSPLNISEAS--ISKQSEPAKKKLL 610
           +C Q+V+P EN+ SN          NT  + +  A    NI  A+   SK S+P  + LL
Sbjct: 553 TCLQEVRPSENKHSN---------TNTSTQNLAEAAVSSNIKNATGDASKDSQPDVQNLL 603


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -1

Query: 538 NTHLPCLCVPCW--SYLDSFVITTP---IFKWLDILTTRWQRYNN 419
           N  +P LCV  W  +YLD + +      I KW D++   W   NN
Sbjct: 168 NAIVPLLCVNLWQYAYLDDYGLNGKKMYITKWWDMI--NWTVVNN 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,115
Number of Sequences: 5004
Number of extensions: 51389
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)