Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060417.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_53907| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-41)                 28   8.0  

>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 437  SCSQDVQPLENRCSNDKAIQVAPARNTKARQVCIATSP 550
            S SQ +      CSN K I   P +  K  + C+A +P
Sbjct: 2363 STSQGMNHQGQTCSNYKLINKQPRQTRKTTKACVAEAP 2400


>SB_53907| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-41)
          Length = 686

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 252 WSSLSCIAYNSPCRFPAM*TLNLSFLYLHSDKYIG 148
           +S LSCI  +SP  FP +  L  SF + + + +IG
Sbjct: 212 YSFLSCILNSSPVLFPILKPLFYSFGFDYMEYFIG 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,480,265
Number of Sequences: 59808
Number of extensions: 353769
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)