Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060417.seq
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    25   1.7  
U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    25   2.2  
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    24   5.1  

>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 422 IIPLPSCSQDVQPLENRCSNDKA-IQVAPARN 514
           ++P P+ S D+ P+EN  S  K  ++  PAR+
Sbjct: 185 VLPWPALSPDLNPIENLWSTLKRHVKNQPARS 216


>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 422 IIPLPSCSQDVQPLENRCSN-DKAIQVAPARN 514
           ++P P+ S D+ P+EN  S   + ++  PAR+
Sbjct: 257 VLPWPALSPDLNPIENLWSTLKRQLKNQPARS 288


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 541 GNTHLPCLCVPCWSYLDSFVITTPIFKWLDI 449
           G   L  LC+ CW    +FV+   I K + I
Sbjct: 398 GVQSLSALCLACWGVCSTFVLLWLINKVVPI 428


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,490
Number of Sequences: 2352
Number of extensions: 12028
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)