Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060417.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-3|AAN63455.1|  205|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U28944-2|AAL08028.1|  339|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U28944-1|AAA68368.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine rece...    28   7.1  

>U28944-3|AAN63455.1|  205|Caenorhabditis elegans Hypothetical
           protein C18A3.4c protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -3

Query: 323 IFVFYLPDNRIWMVNSLVSFEFIDGAHYLVLHIILHV 213
           +   Y+P  R+W ++ L+SF +   A ++++ ++LH+
Sbjct: 95  LVAMYMP--RVWFLSHLLSFLYFSFALWVIICLLLHI 129


>U28944-2|AAL08028.1|  339|Caenorhabditis elegans Hypothetical
           protein C18A3.4b protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -3

Query: 323 IFVFYLPDNRIWMVNSLVSFEFIDGAHYLVLHIILHV 213
           +   Y+P  R+W ++ L+SF +   A ++++ ++LH+
Sbjct: 95  LVAMYMP--RVWFLSHLLSFLYFSFALWVIICLLLHI 129


>U28944-1|AAA68368.1|  342|Caenorhabditis elegans Hypothetical
           protein C18A3.4a protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -3

Query: 323 IFVFYLPDNRIWMVNSLVSFEFIDGAHYLVLHIILHV 213
           +   Y+P  R+W ++ L+SF +   A ++++ ++LH+
Sbjct: 95  LVAMYMP--RVWFLSHLLSFLYFSFALWVIICLLLHI 129


>U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 5 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 520 LCVPCWSYLDSFVITTPIFKWLDILTTRWQRY 425
           L VP  + + SF+  TP  KW  + T  W+ Y
Sbjct: 272 LFVPVLTPISSFIFVTPYRKWF-LKTCHWRNY 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,637
Number of Sequences: 27780
Number of extensions: 282706
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)