Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060417.seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    25   0.88 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.2  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 260 IRMKPNCLPSKFDCRADRKRKFTHSE 337
           + M+P C+  ++ C   RK K    E
Sbjct: 47  VGMRPECMVPEYQCAVKRKEKKAQKE 72


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +2

Query: 260 IRMKPNCLPSKFDCRADRKRKFTHSE 337
           + M+P C+  ++ C   RK +    E
Sbjct: 250 VGMRPECVVPEYQCAVKRKEEKAQKE 275


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 652 KSRVYVIRKYYPQDQQFFFCWF*LFTY 572
           KS   +  +Y+P DQQ  F  F  +TY
Sbjct: 142 KSSCEIDVRYFPFDQQTCFMKFGSWTY 168


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -3

Query: 287 MVNSLVSFEFIDGAHYLVLHIILHVVFQLCEL 192
           +VN+ ++F F+D + +    ++ + VF+  EL
Sbjct: 27  LVNAKLAFGFLDNSVWADGLLVFYEVFRYLEL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,459
Number of Sequences: 438
Number of extensions: 3730
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)