Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060416.seq
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...   118   8e-28
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     93   2e-20
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    29   0.35 
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    28   1.1  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   1.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.2  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   4.3  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   5.7  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (283), Expect = 8e-28
 Identities = 59/86 (68%), Positives = 62/86 (72%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429
           LGLLK KLAK R+QLLEP+ K G KGEGFDVLKSGDARVA IGFPSVGK           
Sbjct: 27  LGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDARVAFIGFPSVGKSTLLSAITKTK 86

Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507
              ASYEFTTLT IPGV+EY G  IQ
Sbjct: 87  SATASYEFTTLTAIPGVLEYDGAEIQ 112



 Score = 33.9 bits (74), Expect = 0.016
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           MLDLPGIIEGA+QG+G
Sbjct: 113 MLDLPGIIEGASQGRG 128



 Score = 31.1 bits (67), Expect = 0.11
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +2

Query: 173 MGXLXXXXXXXXXXARTQKNKATEYHL 253
           MG L           RTQKNKATEYHL
Sbjct: 1   MGVLEKIQEIEAEMRRTQKNKATEYHL 27


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 45/86 (52%), Positives = 56/86 (65%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429
           LG+LKAKLAK + +L+ P+  GG  G GFDV ++G   V  IGFPSVGK           
Sbjct: 28  LGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTGIGTVGFIGFPSVGKSTLMTQLTGTR 87

Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507
            EAA+YEFTTLT +PGV++Y G  IQ
Sbjct: 88  SEAAAYEFTTLTTVPGVLQYNGAKIQ 113



 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGA  G+G
Sbjct: 114 ILDLPGIIEGAKDGRG 129


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 489 SRXQHTMLDLPGIIEGAAQGQG 554
           S  Q+ + D+PGII+GA+ G+G
Sbjct: 287 SSFQYRLADIPGIIKGASDGKG 308



 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 364 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTL 462
           + L+G P+ GK            +   YEFTT+
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTI 271


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 108 YLIKTEFTVSIISY*KTIQILKFYLMPIQNIIMLVP 1
           +L K E    I+   +T+QILK Y  PI NI M+ P
Sbjct: 53  HLTKAEEVPDILM--QTVQILKSYSTPIANIEMVSP 86


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 247 IFSRFIFLCSRDFFLNFXYF 188
           IFS F FLC R+FF  F  +
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY 379


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 178 PHDSASLSDNYLPRSQLIDNVFRL 107
           PHDS+ LS NY P S L    F +
Sbjct: 438 PHDSSMLSSNYRPPSALSPRNFNV 461


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 13  NYILDRH*IKFKNLYSFLV 69
           N++L+ H ++F +LY F+V
Sbjct: 295 NFVLENHLVRFSSLYIFIV 313


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 350 DFSTSKPSPLSPPFFEGSSNCDLYFANLAFKXPSDIQSLYFSVFSRFLSQF 198
           DFSTS P P   P    ++  DL    LA      + ++Y  V S   + F
Sbjct: 22  DFSTSSPVPCLNPLSHENNRIDLIRDLLASLSKEGVVAVYNHVRSLLFTDF 72


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 355 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 492
           + R  L+ G+P+VGK            +   Y FTT +   G  +Y+
Sbjct: 167 NTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYK 213


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 409 IKGSTXPQKESLSKQLEHHQTLVHRNL 329
           +K S   Q   L++++ HH+ L+H N+
Sbjct: 59  LKSSCRKQAIILAREIHHHRRLLHPNI 85


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 383 GKP-IKATRASPDFSTSKPSPLSPPFFEGSSNCDLYFANLAFKXPS 249
           G+P +    ASP  S   P P  PP    S N D Y  +   + P+
Sbjct: 820 GRPALPDEMASPSSSIGHPLPSPPPADFNSLNVDFYEPHSYLESPA 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,937
Number of Sequences: 5004
Number of extensions: 32695
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)