Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060416.seq
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668...   111   3e-25
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323...   103   1e-22
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    29   2.5  
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712...    29   2.5  
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225...    28   5.8  
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    28   5.8  
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    28   5.8  
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233...    27   7.6  

>07_03_1353 -
           25966332-25966421,25966477-25966528,25966612-25966803,
           25966900-25967199,25967816-25967925,25968696-25968755,
           25968835-25968906,25969172-25969348,25969845-25969898,
           25970188-25970217,25970985-25971026
          Length = 392

 Score =  111 bits (268), Expect = 3e-25
 Identities = 57/88 (64%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGD--KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXX 423
           LGLLKAKLAK R +LL P+ KGG    GEGFDV KSGDARV L+GFPSVGK         
Sbjct: 38  LGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPSVGKSTLLNKLTG 97

Query: 424 XXXEAASYEFTTLTCIPGVIEYRGXNIQ 507
              E A+YEFTTLTCIPGVI Y+G  IQ
Sbjct: 98  TFSEVAAYEFTTLTCIPGVIMYKGAKIQ 125



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGA  G+G
Sbjct: 126 LLDLPGIIEGAKDGKG 141


>05_03_0671 +
           16831185-16831254,16832017-16832084,16832318-16832394,
           16832910-16833090,16833192-16833248,16834182-16834256,
           16834820-16834939,16835018-16835224
          Length = 284

 Score =  103 bits (247), Expect = 1e-22
 Identities = 52/86 (60%), Positives = 58/86 (67%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429
           LG LKAK+AK R+QLLEP K     G+GF+V K G  RVALIGFPSVGK           
Sbjct: 27  LGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTH 86

Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507
            EAASYEFTTLTCIPG+I+Y    IQ
Sbjct: 87  SEAASYEFTTLTCIPGIIQYNDTKIQ 112



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +2

Query: 173 MGXLXXXXXXXXXXARTQKNKATEYHL 253
           MG L          ARTQKNKATEYHL
Sbjct: 1   MGILERIKEIEAEMARTQKNKATEYHL 27



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGA++G+G
Sbjct: 113 LLDLPGIIEGASEGKG 128


>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 358 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 489
           A V L+G P+ GK            E A Y FTTL    G + Y
Sbjct: 340 ADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTY 383


>10_03_0019 -
           7123502-7123673,7124145-7124226,7124228-7124394,
           7124569-7125182
          Length = 344

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 340 HRNLHLCLHLFLKVPATVIYI 278
           HR+LHL LHL L  PAT I +
Sbjct: 34  HRHLHLDLHLPLPPPATAILV 54


>03_06_0323 +
           33121062-33121653,33121748-33121839,33122482-33122565,
           33123126-33123203,33123500-33123700,33123821-33123928,
           33124145-33124219,33124338-33124537,33124654-33124722,
           33125159-33125279,33126840-33127120,33127522-33127594
          Length = 657

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 504 TMLDLPGIIEGAAQGQG 554
           T+ DLPG+IEGA  G+G
Sbjct: 334 TLADLPGLIEGAHLGKG 350


>03_05_0890 - 28547462-28547545,28548451-28548528,28548641-28548814,
            28548902-28548958,28549065-28549116,28549907-28549995,
            28550259-28550344,28550427-28550637,28551790-28551882,
            28551958-28552098,28552175-28552267,28553879-28554113,
            28554263-28554435,28555234-28556571,28556668-28556853,
            28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 308  FEGSSNCDLYFANLAFKXPSDIQSLYFSVFSRFL 207
            FE SSN +  F+N +FK  S + S+ + + ++ L
Sbjct: 1281 FESSSNVNYSFSNFSFKNLSQLVSINYDLLTKGL 1314


>03_01_0607 +
           4464669-4465367,4466212-4467369,4468005-4469114,
           4469273-4469314,4469496-4469572,4469671-4469755,
           4469818-4469901,4469988-4470089,4470181-4470279,
           4470794-4470919
          Length = 1193

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 412 SIKGSTXPQKESLSKQLEHH 353
           ++KG+T PQ E +  Q++HH
Sbjct: 606 NLKGTTQPQPERVKNQVDHH 625


>10_08_1008 -
           22222051-22222377,22222479-22222640,22223179-22223310,
           22224556-22224608,22224713-22225256
          Length = 405

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 392 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSN 291
           P E + ++   A P  +T  P+P++ P  EG+S+
Sbjct: 312 PVETRKVEPMSAPPQMATYVPAPVASPPSEGTSS 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,129,948
Number of Sequences: 37544
Number of extensions: 185520
Number of successful extensions: 529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)