BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060416.seq (554 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 111 3e-25 05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 103 1e-22 11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 2.5 10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 29 2.5 03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 28 5.8 03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 5.8 03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 28 5.8 10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 27 7.6 >07_03_1353 - 25966332-25966421,25966477-25966528,25966612-25966803, 25966900-25967199,25967816-25967925,25968696-25968755, 25968835-25968906,25969172-25969348,25969845-25969898, 25970188-25970217,25970985-25971026 Length = 392 Score = 111 bits (268), Expect = 3e-25 Identities = 57/88 (64%), Positives = 62/88 (70%), Gaps = 2/88 (2%) Frame = +1 Query: 250 LGLLKAKLAKYRSQLLEPSKKGGD--KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXX 423 LGLLKAKLAK R +LL P+ KGG GEGFDV KSGDARV L+GFPSVGK Sbjct: 38 LGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPSVGKSTLLNKLTG 97 Query: 424 XXXEAASYEFTTLTCIPGVIEYRGXNIQ 507 E A+YEFTTLTCIPGVI Y+G IQ Sbjct: 98 TFSEVAAYEFTTLTCIPGVIMYKGAKIQ 125 Score = 29.9 bits (64), Expect = 1.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 507 MLDLPGIIEGAAQGQG 554 +LDLPGIIEGA G+G Sbjct: 126 LLDLPGIIEGAKDGKG 141 >05_03_0671 + 16831185-16831254,16832017-16832084,16832318-16832394, 16832910-16833090,16833192-16833248,16834182-16834256, 16834820-16834939,16835018-16835224 Length = 284 Score = 103 bits (247), Expect = 1e-22 Identities = 52/86 (60%), Positives = 58/86 (67%) Frame = +1 Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429 LG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVGK Sbjct: 27 LGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTH 86 Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507 EAASYEFTTLTCIPG+I+Y IQ Sbjct: 87 SEAASYEFTTLTCIPGIIQYNDTKIQ 112 Score = 33.1 bits (72), Expect = 0.15 Identities = 16/27 (59%), Positives = 16/27 (59%) Frame = +2 Query: 173 MGXLXXXXXXXXXXARTQKNKATEYHL 253 MG L ARTQKNKATEYHL Sbjct: 1 MGILERIKEIEAEMARTQKNKATEYHL 27 Score = 31.5 bits (68), Expect = 0.47 Identities = 12/16 (75%), Positives = 16/16 (100%) Frame = +3 Query: 507 MLDLPGIIEGAAQGQG 554 +LDLPGIIEGA++G+G Sbjct: 113 LLDLPGIIEGASEGKG 128 >11_08_0079 + 28189782-28189907,28190445-28190553,28190876-28190958, 28191500-28191562,28191658-28192854,28193247-28193310, 28193338-28193426,28194404-28194463,28195442-28195547, 28196057-28196069,28196940-28197111 Length = 693 Score = 29.1 bits (62), Expect = 2.5 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +1 Query: 358 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 489 A V L+G P+ GK E A Y FTTL G + Y Sbjct: 340 ADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTY 383 >10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394, 7124569-7125182 Length = 344 Score = 29.1 bits (62), Expect = 2.5 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 Query: 340 HRNLHLCLHLFLKVPATVIYI 278 HR+LHL LHL L PAT I + Sbjct: 34 HRHLHLDLHLPLPPPATAILV 54 >03_06_0323 + 33121062-33121653,33121748-33121839,33122482-33122565, 33123126-33123203,33123500-33123700,33123821-33123928, 33124145-33124219,33124338-33124537,33124654-33124722, 33125159-33125279,33126840-33127120,33127522-33127594 Length = 657 Score = 27.9 bits (59), Expect = 5.8 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 504 TMLDLPGIIEGAAQGQG 554 T+ DLPG+IEGA G+G Sbjct: 334 TLADLPGLIEGAHLGKG 350 >03_05_0890 - 28547462-28547545,28548451-28548528,28548641-28548814, 28548902-28548958,28549065-28549116,28549907-28549995, 28550259-28550344,28550427-28550637,28551790-28551882, 28551958-28552098,28552175-28552267,28553879-28554113, 28554263-28554435,28555234-28556571,28556668-28556853, 28557625-28557713,28557756-28557905,28557951-28558596 Length = 1324 Score = 27.9 bits (59), Expect = 5.8 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -1 Query: 308 FEGSSNCDLYFANLAFKXPSDIQSLYFSVFSRFL 207 FE SSN + F+N +FK S + S+ + + ++ L Sbjct: 1281 FESSSNVNYSFSNFSFKNLSQLVSINYDLLTKGL 1314 >03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114, 4469273-4469314,4469496-4469572,4469671-4469755, 4469818-4469901,4469988-4470089,4470181-4470279, 4470794-4470919 Length = 1193 Score = 27.9 bits (59), Expect = 5.8 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 412 SIKGSTXPQKESLSKQLEHH 353 ++KG+T PQ E + Q++HH Sbjct: 606 NLKGTTQPQPERVKNQVDHH 625 >10_08_1008 - 22222051-22222377,22222479-22222640,22223179-22223310, 22224556-22224608,22224713-22225256 Length = 405 Score = 27.5 bits (58), Expect = 7.6 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -1 Query: 392 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSN 291 P E + ++ A P +T P+P++ P EG+S+ Sbjct: 312 PVETRKVEPMSAPPQMATYVPAPVASPPSEGTSS 345 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,129,948 Number of Sequences: 37544 Number of extensions: 185520 Number of successful extensions: 529 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 528 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1257681096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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