Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060416.seq
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                  120   6e-28
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              97   1e-20
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   71   5e-13
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               31   0.63 
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   28   4.5  
SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)                28   5.9  

>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score =  120 bits (290), Expect = 6e-28
 Identities = 61/87 (70%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXX 426
           LGLLKAKLAKYR+QLLEP+K     KG+GFDV+KSGDARVALIGFPSVGK          
Sbjct: 27  LGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSVGKSTLLTKLTQT 86

Query: 427 XXEAASYEFTTLTCIPGVIEYRGXNIQ 507
               ASYEFTTLTCIPGVI Y G NIQ
Sbjct: 87  QSACASYEFTTLTCIPGVINYNGANIQ 113



 Score = 33.9 bits (74), Expect = 0.090
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGAAQG+G
Sbjct: 114 LLDLPGIIEGAAQGKG 129



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +2

Query: 173 MGXLXXXXXXXXXXARTQKNKATEYHL 253
           MG L          ARTQKNKATEYHL
Sbjct: 1   MGILEKISEIEKEIARTQKNKATEYHL 27


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 51/75 (68%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXX 426
           LGLLKAKLAKYR+QLLEP+K     KG+GFDV+KSGDARVALIGFPSVGK          
Sbjct: 27  LGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSVGKSTLLTKLTQT 86

Query: 427 XXEAASYEFTTLTCI 471
               ASYEFTTLT I
Sbjct: 87  QSACASYEFTTLTGI 101



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +2

Query: 173 MGXLXXXXXXXXXXARTQKNKATEYHL 253
           MG L          ARTQKNKATEYHL
Sbjct: 1   MGILEKISEIEKEIARTQKNKATEYHL 27


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 32/58 (55%), Positives = 38/58 (65%)
 Frame = +1

Query: 334 FDVLKSGDARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGXNIQ 507
           FDV K+GDAR+  +GFPSVGK            E A+YEFTTLT +PGVI Y+G  IQ
Sbjct: 41  FDVAKTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQ 98


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 373 IGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 489
           +GFP+ GK              A+Y FTTL    G++EY
Sbjct: 1   VGFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 368 ATRASPDF--STSKPSPLSPPFFEGSSNCD 285
           + +ASP F  S S+ SP SPP   GSS  D
Sbjct: 221 SNKASPRFAISPSRDSPTSPPLRPGSSGSD 250


>SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)
          Length = 428

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 385 KESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVI 284
           K +++KQ++  +T  HR+L L   L   VPAT +
Sbjct: 38  KHAIAKQVKRAKTGFHRSLTLAHKLLYAVPATPV 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,947
Number of Sequences: 59808
Number of extensions: 218102
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)