Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060416.seq
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical p...   131   4e-31
Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...   103   7e-23
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...   103   7e-23
Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.079
AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    30   1.3  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   6.9  
AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    27   6.9  
U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protei...    27   9.1  
AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical ...    27   9.1  

>L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical
           protein C02F5.3 protein.
          Length = 366

 Score =  131 bits (316), Expect = 4e-31
 Identities = 63/86 (73%), Positives = 67/86 (77%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429
           LGLLKAKLAKYR QLLEP+ KGG KGEGFDV+KSGDARVA++GFPSVGK           
Sbjct: 27  LGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGDARVAMVGFPSVGKSTLLSSMTSTH 86

Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507
            EAA YEFTTLTCIPGVI Y G NIQ
Sbjct: 87  SEAAGYEFTTLTCIPGVISYNGANIQ 112



 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGA+QG+G
Sbjct: 113 LLDLPGIIEGASQGKG 128



 Score = 31.9 bits (69), Expect = 0.32
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 173 MGXLXXXXXXXXXXARTQKNKATEYHL 253
           MG L          +RTQKNKATEYHL
Sbjct: 1   MGILEKIAEIEHEISRTQKNKATEYHL 27


>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  103 bits (248), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 57/86 (66%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429
           LG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVGK           
Sbjct: 27  LGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLCNLAGVF 86

Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507
            E A+YEFTTLT +PGVI Y+G  IQ
Sbjct: 87  SEVAAYEFTTLTTVPGVIRYKGAKIQ 112



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGA  G+G
Sbjct: 113 LLDLPGIIEGAKDGKG 128


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  103 bits (248), Expect = 7e-23
 Identities = 49/86 (56%), Positives = 57/86 (66%)
 Frame = +1

Query: 250 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 429
           LG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVGK           
Sbjct: 27  LGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLCNLAGVF 86

Query: 430 XEAASYEFTTLTCIPGVIEYRGXNIQ 507
            E A+YEFTTLT +PGVI Y+G  IQ
Sbjct: 87  SEVAAYEFTTLTTVPGVIRYKGAKIQ 112



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 507 MLDLPGIIEGAAQGQG 554
           +LDLPGIIEGA  G+G
Sbjct: 113 LLDLPGIIEGAKDGKG 128


>Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical
           protein M01E5.2 protein.
          Length = 358

 Score = 33.9 bits (74), Expect = 0.079
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 325 GEGFDVLKSGDARV----ALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 489
           GEG +++   + RV     L+GFP+ GK            + ASY FTTL    GV+ Y
Sbjct: 174 GEGEELIYDVEMRVMATAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFY 232


>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 370 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 492
           L GFP+VGK            E   Y FTT     G ++YR
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYR 214


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 370 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 492
           L GFP+VGK            E   Y FTT     G ++YR
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYR 214


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 392 PTEGKPIKATRASPDFSTSK-PSPLSPP 312
           P EG P  A   +P  STS+ P PL PP
Sbjct: 24  PREGAPPPAPPLAPGASTSQAPPPLQPP 51


>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 323 LSPPFFEGSSNCDLYFANLAFKXPSDIQSLYFSVFSRF-LSQFXIFSL 183
           +S PF    +   LYF+   F+ P +I + + +V+S F L+ F   S+
Sbjct: 60  ISKPFTHNYNGTLLYFSATNFQLPINISNAFITVWSCFYLTTFSFISV 107


>U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protein
           58 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 326 PLSPPFFEGSSNCDLYFANLAFKXP 252
           P  PP F G   C+ ++ NL+   P
Sbjct: 105 PPGPPGFNGEDGCNRFYCNLSHNLP 129


>AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical
           protein Y59A8A.4 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 379 SLSKQLEH-HQTLVHR-NLHLCLHLFLKVPATVIYILLIWLLRXQVIFSRFIFLCS 218
           SLSK   H H+  +   NL + + L +    T+I +L   ++     F+  +++CS
Sbjct: 226 SLSKHTVHMHKAFIKALNLQIAIPLIILFAPTIIGVLFRTIISNHQGFNNVVYICS 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,136,520
Number of Sequences: 27780
Number of extensions: 179370
Number of successful extensions: 566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)