Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060416.seq
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.68 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 101 LKQNSQYQSFHTKKLYRFLNFI 36
           +  N+ Y +++ KKLY  +N+I
Sbjct: 312 IHNNNNYNNYNNKKLYYNINYI 333


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 349 TLVHRNLHLCLHLFLKVPATVIYILLI 269
           TL+     +   LF  +P T+I +L I
Sbjct: 216 TLIEHAFEISTMLFFVLPMTIIIVLYI 242


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 439  ASYEFTTLTCIPGVI 483
            A YEF TLT   G I
Sbjct: 1545 AEYEFATLTVTGGTI 1559


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 295 ATVIYILLIWLLRXQVIFSRFIFLC 221
           A V+  L +W+     I   FI LC
Sbjct: 482 AMVLDRLFLWIFTIASIVGTFIILC 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,709
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)