Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060415.seq
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 161 5e-41
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 8e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 85 7e-18
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 83 2e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 55 8e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 45 7e-06
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.27
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.36
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 2.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 161 bits (392), Expect = 5e-41
Identities = 73/84 (86%), Positives = 75/84 (89%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKAN 434
DEAQSKRGILTLKYPIEHGIV NW DM KIWHHTFYNELRVAPE HP LLTEAPLNPK+N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EKMT I+FETFN PA YVAIQAV
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAV 139
Score = 113 bits (273), Expect = 1e-26
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = +1
Query: 94 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 273
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 39.5 bits (88), Expect = 3e-04
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIVLDSGDGV
Sbjct: 141 SLYASGRTTGIVLDSGDGV 159
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 94.7 bits (225), Expect = 8e-21
Identities = 40/97 (41%), Positives = 65/97 (67%)
Frame = +3
Query: 216 RDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHP 395
+ G + ++ DEA++ R +L +KYP+E+GI+ ++ +M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 396 VLLTEAPLNPKANXEKMTXIMFETFNTPAMYVAIQAV 506
+LLTE P+NP AN EKM MFE + +YVAIQAV
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAV 139
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 100 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 204
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 31.9 bits (69), Expect = 0.067
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYA G + G+V+DSGDGV
Sbjct: 141 SLYAQGLSSGVVVDSGDGV 159
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 85.0 bits (201), Expect = 7e-18
Identities = 36/74 (48%), Positives = 45/74 (60%)
Frame = +3
Query: 285 TLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANXEKMTXIMFE 464
+L YPI HG + NW M + W + + LR PE H LLTE PLNP N E IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 465 TFNTPAMYVAIQAV 506
+FN +Y+A+QAV
Sbjct: 149 SFNCAGLYIAVQAV 162
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 112 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 261
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 83.4 bits (197), Expect = 2e-17
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 EAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNE-LRVAPEXHPVLLTEAPLNPKAN 434
EAQ+ RG+L ++ PIE GI+ NW DM +IW + + ++ L PE HP+LLTE PL N
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EK+ +ET N PA+ ++Q V
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPV 144
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +1
Query: 112 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59
Score = 31.1 bits (67), Expect = 0.12
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
+LYAS RT GIVL+ GDG+
Sbjct: 146 ALYASARTTGIVLECGDGL 164
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.8 bits (126), Expect = 8e-09
Identities = 26/73 (35%), Positives = 37/73 (50%)
Frame = +3
Query: 282 LTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANXEKMTXIMF 461
+ +K I +G V NW +W + +L+ P HP+L+TE NP N K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 462 ETFNTPAMYVAIQ 500
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 97 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 198
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.6 bits (108), Expect = 1e-06
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +3
Query: 297 PIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANXEKMTXIMFETFNT 476
P E +++NW M ++ +TF +L + HP+ +TE NP MT ++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 477 PAMYVAIQAV 506
P++ I +
Sbjct: 145 PSVAYGIDGL 154
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 112 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 207
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.2 bits (102), Expect = 7e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 306 HGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANXEKMTXIMFETFNTPAM 485
+GI+ +W W +L+V P + +++TE NP++ +++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 486 YVAIQAV 506
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 97 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 198
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.27
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 254 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 93
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.5 bits (63), Expect = 0.36
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 357 FYNELRVAPEXHPVLLTE--APLNPKANXEKMTXIMFETFNTPAM---YVAIQ 500
+Y L E HP+LLT+ A L P+ + ++ I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 2.5
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Frame = +3
Query: 297 PIEHGIVTNWXDMXKIWHHTFYNELRVAPE----XHPVLLTEAPLNPKANXEKMTXIMFE 464
PI+ G V +W + W H Y+ L P +PV L + E T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 465 TFNTPAMYVAIQ 500
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 233 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 141
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 139 TYRSHCLLPTRQLLRRTS*ISEI 71
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 253 LHKSPSVPYRPSRPDGGAFPRSRGTR 176
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 399 LLTEAPLNPKANXEKMTXIMFETFN 473
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,472
Number of Sequences: 5004
Number of extensions: 46133
Number of successful extensions: 120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -