Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060415.seq
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 171 4e-43
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 171 4e-43
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 2e-26
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 1e-18
SB_54| Best HMM Match : Actin (HMM E-Value=0) 79 2e-15
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 62 3e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 8e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 6e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 42 3e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 38 0.008
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.50
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.5
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 30 1.5
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 2.0
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 2.0
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.0
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.6
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 28 6.1
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 27 8.1
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06) 27 8.1
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9) 27 8.1
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 171 bits (415), Expect = 4e-43
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKAN 434
DEAQSKRGILTLKYPIEHGIVTNW DM KIWHHTFYNELRVAPE HPVLLTEAPLNPKAN
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EKMT IMFETFN+PAMYVAIQAV
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAV 140
Score = 117 bits (282), Expect = 6e-27
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 267
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 AK 273
+K
Sbjct: 61 SK 62
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIV+DSGDGV
Sbjct: 142 SLYASGRTTGIVMDSGDGV 160
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 171 bits (415), Expect = 4e-43
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKAN 434
DEAQSKRGILTLKYPIEHGIVTNW DM KIWHHTFYNELRVAPE HPVLLTEAPLNPKAN
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 115
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EKMT IMFETFN+PAMYVAIQAV
Sbjct: 116 REKMTQIMFETFNSPAMYVAIQAV 139
Score = 114 bits (275), Expect = 4e-26
Identities = 52/60 (86%), Positives = 57/60 (95%)
Frame = +1
Query: 94 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 273
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIV+DSGDGV
Sbjct: 141 SLYASGRTTGIVMDSGDGV 159
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 171 bits (415), Expect = 4e-43
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKAN 434
DEAQSKRGILTLKYPIEHGIVTNW DM KIWHHTFYNELRVAPE HPVLLTEAPLNPKAN
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 115
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EKMT IMFETFN+PAMYVAIQAV
Sbjct: 116 REKMTQIMFETFNSPAMYVAIQAV 139
Score = 116 bits (278), Expect = 2e-26
Identities = 53/60 (88%), Positives = 57/60 (95%)
Frame = +1
Query: 94 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 273
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIV+DSGDGV
Sbjct: 141 SLYASGRTTGIVMDSGDGV 159
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 171 bits (415), Expect = 4e-43
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKAN 434
DEAQSKRGILTLKYPIEHGIVTNW DM KIWHHTFYNELRVAPE HPVLLTEAPLNPKAN
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EKMT IMFETFN+PAMYVAIQAV
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAV 140
Score = 122 bits (293), Expect = 3e-28
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 267
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 AK 273
+K
Sbjct: 61 SK 62
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIV+DSGDGV
Sbjct: 142 SLYASGRTTGIVMDSGDGV 160
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 171 bits (415), Expect = 4e-43
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKAN 434
DEAQSKRGILTLKYPIEHGIVTNW DM KIWHHTFYNELRVAPE HPVLLTEAPLNPKAN
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
Query: 435 XEKMTXIMFETFNTPAMYVAIQAV 506
EKMT IMFETFN+PAMYVAIQAV
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAV 140
Score = 117 bits (282), Expect = 6e-27
Identities = 52/62 (83%), Positives = 58/62 (93%)
Frame = +1
Query: 88 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 267
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 268 AK 273
+K
Sbjct: 61 SK 62
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIV+DSGDGV
Sbjct: 142 SLYASGRTTGIVMDSGDGV 160
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 116 bits (278), Expect = 2e-26
Identities = 52/60 (86%), Positives = 57/60 (95%)
Frame = +1
Query: 94 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 273
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTF 359
DEAQSKRGILTLKYPIEHGIVTNW DM KI TF
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +3
Query: 432 NXEKMTXIMFETFNTPAMYVAIQAV 506
N + M IMFETFN+PAMYVAIQAV
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAV 102
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT GIV+DSGDGV
Sbjct: 104 SLYASGRTTGIVMDSGDGV 122
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 90.2 bits (214), Expect = 1e-18
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = +3
Query: 210 SGRDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTF-YNELRVAPE 386
S + G + L+ DEA R +L + YP+++GIV NW DM +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 387 XHPVLLTEAPLNPKANXEKMTXIMFETFNTPAMYVAIQAV 506
VLLTE PLNP N EKM +MFE + +Y+AIQAV
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAV 143
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 106 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 204
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
+LYA G G+V+DSGDGV
Sbjct: 145 TLYAQGLLTGVVIDSGDGV 163
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +3
Query: 339 KIWHHTFYNELRVAPEXHPVLLTEAPLNPKANXEKMTXIMFETFNTPAMYVAIQAV 506
K+W H F ++LRV E PVLLTEAPLNPK N E+M +MFE+FN P MYVA+QAV
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAV 2184
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 112 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 213
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
+LYASGRT G V D GDGV
Sbjct: 2186 ALYASGRTTGTVFDCGDGV 2204
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = +3
Query: 390 HPVLLTEAPLNPKANXEKMTXIMFETFNTPAMYVAIQAV 506
HPVLLTEAPLNP+ N EK + FETFN PA+++++QAV
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAV 165
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYA+GRT G+VLD+GDGV
Sbjct: 167 SLYATGRTTGVVLDAGDGV 185
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 97 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 213
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.0 bits (124), Expect = 8e-08
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +3
Query: 297 PIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLLTEAPLNPKANXEKMTXIMFETFNT 476
PI+ G++ +W KI + + ++ HP+L++EA N + EK+T +MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 477 PAMYVAIQAV 506
PA ++ +V
Sbjct: 63 PAFFLCKNSV 72
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 82 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 228
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +3
Query: 255 DEAQSKRGILTLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEXHPVLL 404
DEA K T K+PI H IV +W M + W + LR PE H LL
Sbjct: 288 DEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 210 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 94
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 509 SLYASGRTXGIVLDSGDGV 565
SLYASGRT G+V DSGDGV
Sbjct: 20 SLYASGRTTGVVFDSGDGV 38
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +3
Query: 453 IMFETFNTPAMYVAIQAV 506
IMFE FN+PA+YVAIQAV
Sbjct: 1 IMFEAFNSPAVYVAIQAV 18
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 185 GNTARGASSPAKPALHIPEPLSTT 114
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 185 GNTARGASSPAKPALHIPEPLSTT 114
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 185 GNTARGASSPAKPALHIPEPLSTT 114
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 331 SXQLVTI--PCSMGYLRV-RIPLLLCASSLHKSPSVPYRP 221
S LV++ P S Y + RIP LC SL PS PY+P
Sbjct: 260 SPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 213 GRDGRYGTEGLLCRDEAQSKRGIL-TLKYPIEHGIVTNWXDMXKIWHHTFYNELRVAPEX 389
GR G + GL ++ S I L+ P + +VT++ ++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 390 --HPVLLTEAPLNP 425
HPV++TE NP
Sbjct: 165 VNHPVIMTEPVCNP 178
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 243 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 133
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 319 VTIPCSMGYLRVRIPLLLCASSLHKSPSVP 230
V PC M LRVR+ C S LH + P
Sbjct: 60 VACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 185 GNTARGASSPAKPALHIPEPLSTT 114
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 185 GNTARGASSPAKPALHIPEPLSTT 114
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 100 EVAALVVDNGSGMCKAGFAGDDAPRAV 180
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -3
Query: 349 CQIFXMSXQLVTIPCSMGYLRVRIPLLLCASSL--HKSPSVPYRPSRPDGGAFPRSRGTR 176
C + ++V CS + V + ++C+ H+ PSR D FP + R
Sbjct: 102 CSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPSRADVDVFPITCSRR 161
Query: 175 REEHHLLRNRPCTYRSH 125
HH+L + + R+H
Sbjct: 162 CVFHHVLMSMCSSSRAH 178
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 200 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 90
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06)
Length = 230
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 283 RIPLLLCASSLHKSPSVPYRP 221
RIP L SL SPS PY+P
Sbjct: 80 RIPTSLSLISLQSSPSYPYKP 100
>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
Length = 334
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 283 RIPLLLCASSLHKSPSVPYRP 221
RIP L SL SPS PY+P
Sbjct: 57 RIPTSLSLISLQSSPSYPYKP 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,361
Number of Sequences: 59808
Number of extensions: 428536
Number of successful extensions: 1196
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -