Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060415.seq
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   0.93 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 288 GSGYLFCSVPHPYIRVLLSHTDHHALMAGPSHDRGEHGARSIISC 154
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 369  LRVAPEXHPVLLTEAPLNPKANXEKM 446
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 133 GMCKAGFAGD 162
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 192 DRGEHGARSIISCETGLA 139
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 530 YDRTRTAXHGLDGDVHGGRVECF 462
           YDR  T    LDG +  G+V  F
Sbjct: 143 YDRYSTIARPLDGKLSRGQVILF 165


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 192 DRGEHGARSIISCETGLA 139
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,280
Number of Sequences: 438
Number of extensions: 3581
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)