Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060414.seq
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.035
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 0.035
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 328 IRFFYTSLISMAVHLFLLI*SYYFRF 251
           I +FY + I   VHL LL+  YYF +
Sbjct: 238 IYYFYYAFILFTVHLLLLVCIYYFYY 263



 Score = 26.6 bits (56), Expect = 0.14
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 328 IRFFYTSLISMAVHLFLLI*SYYFRFCS 245
           I +FY + I   VHL  L+  Y+F FC+
Sbjct: 146 IYYFYCAFIIFTVHLLFLLCIYHF-FCA 172



 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 328 IRFFYTSLISMAVHLFLLI*SYYF 257
           + +FY + I   VHL  L+  YYF
Sbjct: 113 VYYFYYAFIIFTVHLLFLLCIYYF 136



 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 328 IRFFYTSLISMAVHLFLLI*SYYF 257
           I +FY   I+  VHL  L+ S YF
Sbjct: 56  IYYFYCVSITFNVHLLFLLCSGYF 79



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = -3

Query: 350 TLVILRFDPILLYQSHFHGCSFVPPHLKLLLQILFR*YISII 225
           T+ +L + P +++  HF  C++   +  ++L  ++  Y + I
Sbjct: 80  TVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFI 121


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 99  RKPENIGSQNNIDIEKHANNEK 164
           +KPEN+  ++  D EK   + K
Sbjct: 75  KKPENVKKEDESDEEKPTTSFK 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,584
Number of Sequences: 336
Number of extensions: 1123
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)