Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060414.seq
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    29   0.45 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    29   0.60 
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    29   0.60 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.0  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.0  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   3.2  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.2  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   3.2  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   4.2  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   5.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   5.6  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   5.6  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   7.3  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   7.3  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   7.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   9.7  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   9.7  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 108 ENIGSQNNIDIEKHANNEKNN-HVEEVDQNAETE 206
           +N+ S+NN D E  A  EKNN H  E D N  TE
Sbjct: 133 KNLESRNNRD-ENSAKREKNNSHQVEADTNNATE 165


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 329 DPILLYQSHFHGCSFVPPHLKLLLQILFR*Y 237
           D +++Y    +GCSF  PH K++   L+R Y
Sbjct: 109 DYVIVYIPGGYGCSFDFPHAKVVQDFLYRFY 139


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 SQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHR-SNNTDISSE 248
           + +N+ +EK    EK+  V  V    ETE   H  S   D+  E
Sbjct: 11  ANSNVGVEKDKEKEKSKGVSNVPNEVETESSSHEPSFKKDVDEE 54


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 248 TKSEVIASNEEEQMNSHGNETGIEESDQ 331
           T SE I  N E ++NS G +  IEE ++
Sbjct: 50  TSSENIGKNPERELNSDGTDRIIEEEEE 77


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 LEDSTVENNDETESLREVETKFKNQMKI 508
           L D  VE ND  +S  E   +F+ QMK+
Sbjct: 14  LNDVNVEENDAAQSFAEKVQRFRYQMKV 41


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 463 KSERSGDQIQESDEDKKLMKMWKEV 537
           + + S DQ +ESD+ KK  K  KE+
Sbjct: 124 RGQNSNDQPEESDDKKKRKKKVKEI 148


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 EVDQNAETEEKIHRSNNTDISSEQN 254
           EVD+N+ETE     ++NT    EQN
Sbjct: 148 EVDRNSETEGTREENSNTSDWDEQN 172


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 312 PVSFPWLFICSSSFEAITSDFVQM 241
           P S  WL ICS  F+A+    V+M
Sbjct: 241 PNSLKWLIICSKQFQALVHLEVKM 264


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 120 SQNNID---IEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQNLK 260
           S NN D   IEK  +   N +     ++ +TEE +   N+ D+ S ++L+
Sbjct: 406 SSNNYDNEIIEKVDSANSNKNATNDIKDLQTEEIVEEGNSIDLESIKSLQ 455


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 96  FRKPENIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDIS 242
           F     +  +NN+DI   A+       +E+++  + EEK  + N  D+S
Sbjct: 278 FEDISKMEKENNLDIMIEASGFNKKQSKELEKYRQEEEK-RKENGDDLS 325


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 126 NNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDIS 242
           N++ +EKH     ++H    D +  T E +  S   D+S
Sbjct: 36  NSVSLEKHDFQGSDDHDSSTDLSDSTLEDVEGSEWADVS 74


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 108 ENIGSQNNIDIEKHANNEK--NNHVEEVDQNAETEEKIHRSNNTDISSEQNL 257
           +NI  Q++   E+ A  E+  ++  ++VD N ++   I  S N DI+ + +L
Sbjct: 226 KNIDGQDDDSSEQTAAFEEYDDDDDDDVDDNEQSNSMIETSANADITPKASL 277


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 108 ENIGSQNNIDIEK--HANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQNL 257
           E  G  N ++IE+  H +N         D N   E K H ++N + ++  +L
Sbjct: 17  EESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDL 68


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 111 NIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHR--SNNTDISSEQNLK 260
           N  SQ  + +EK    E+N+  +E   N E EEK  +  S N D+  +++ K
Sbjct: 273 NEPSQERLPVEK----EQNDKSDEEGSNNEQEEKQDKKQSTNRDLCRKESCK 320


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 108 ENIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQNLK 260
           ENIGS+ +I  E H      N  ++   + E  EK+     +D  S   L+
Sbjct: 156 ENIGSETSIPFENHNEITNMNTAKDKLSSNEMYEKLRDLGFSDDQSRLALE 206


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 99  RKPENIGSQNNIDIEKH----ANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQNL 257
           R  EN  +   + +E H    +NN+ NNH++++ +        +     +  S  NL
Sbjct: 319 RSSENENTIRRLALENHELKNSNNQLNNHIDDLTREKHLIALSNNPKGDEFLSPSNL 375


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 114 IGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQNLK 260
           +G Q++ +   H NN+K  HV      +    + H + ++  SS  N++
Sbjct: 420 MGQQSDSNYSDHHNNDKRAHVSRRHSTSRKIAQSH-TGSSSTSSAANVR 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,550
Number of Sequences: 5004
Number of extensions: 20601
Number of successful extensions: 101
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)