Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060414.seq
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral signa...    30   1.3  
AF100655-9|ABO16446.1|  375|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF100655-7|ABO16448.1|  375|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF100655-5|ABO16449.1|  375|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF100655-3|ABO16450.1|  375|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z70203-3|CAA94106.2|  219|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81531-4|CAB04318.1|  285|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans alkyl-dihydro...    27   8.9  
AC024801-10|AAK68514.1|  597|Caenorhabditis elegans Alkyl-dihydr...    27   8.9  

>AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral
           signaling target protein 2 protein.
          Length = 661

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 105 PENIGSQNNIDIEKHANNEKNNHVEEVDQNAETE 206
           PE I   +N+D+E+ + +E + H++E    ++ E
Sbjct: 393 PETIEEPDNVDMEESSESEVDTHIDETRNESDDE 426


>AF100655-9|ABO16446.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.1 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 KNNHVEEVDQNAETEEK-IHRSNNTDISSEQNLK 260
           K NH E +D+ ++ E   IH +N +D+  E  L+
Sbjct: 328 KRNHKERIDEKSDRENVIIHMNNTSDLHIEYELE 361


>AF100655-7|ABO16448.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.2 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 KNNHVEEVDQNAETEEK-IHRSNNTDISSEQNLK 260
           K NH E +D+ ++ E   IH +N +D+  E  L+
Sbjct: 328 KRNHKERIDEKSDRENVIIHMNNTSDLHIEYELE 361


>AF100655-5|ABO16449.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.3 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 KNNHVEEVDQNAETEEK-IHRSNNTDISSEQNLK 260
           K NH E +D+ ++ E   IH +N +D+  E  L+
Sbjct: 328 KRNHKERIDEKSDRENVIIHMNNTSDLHIEYELE 361


>AF100655-3|ABO16450.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C8.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 KNNHVEEVDQNAETEEK-IHRSNNTDISSEQNLK 260
           K NH E +D+ ++ E   IH +N +D+  E  L+
Sbjct: 328 KRNHKERIDEKSDRENVIIHMNNTSDLHIEYELE 361


>Z70203-3|CAA94106.2|  219|Caenorhabditis elegans Hypothetical
           protein C05G5.3 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
 Frame = +3

Query: 123 QNNIDIEKHANNEKNNHVEEVDQNAET--------EEKIHRSNNTDISSEQN 254
           +N+   E+ +N+EK+N  E+ +  +ET        EE++ + NN  I++ QN
Sbjct: 71  ENDPPKERASNSEKDNSEEKTESESETDEQDEDEEEEQMPQFNNRKITNTQN 122


>Z81531-4|CAB04318.1|  285|Caenorhabditis elegans Hypothetical
           protein F36D3.4 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 117 GSQNNIDIEKHANNEKNNHVEEVDQNAETEE 209
           G + +ID+ +H   EK +H+  +  NA TE+
Sbjct: 232 GDKLSIDVLRHNGVEKTDHLIVLTSNASTEQ 262


>AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans
           alkyl-dihydroxyacetonephosphatesynthase protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 431 DSTVENNDETESLREVETKFKNQMKIR 511
           D+ VEN D  E L+E +  F N+ +IR
Sbjct: 85  DAPVENEDIIEFLQENKISFSNEARIR 111


>AC024801-10|AAK68514.1|  597|Caenorhabditis elegans
           Alkyl-dihydroxyacetonephosphatesynthase protein 1
           protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 431 DSTVENNDETESLREVETKFKNQMKIR 511
           D+ VEN D  E L+E +  F N+ +IR
Sbjct: 85  DAPVENEDIIEFLQENKISFSNEARIR 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,048,438
Number of Sequences: 27780
Number of extensions: 109955
Number of successful extensions: 553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)