Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060414.seq
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.51 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.51 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 108 ENIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQN 254
           +N G+QN  +  ++A+N+  N+    +QNA  +    +++N    ++QN
Sbjct: 425 QNAGNQNADN--QNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQN 471


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 316 YTSLISMAVHLFLLI*SYYFRFCSDDISVLLER 218
           Y +L S  + LF++I  YY  FC+    VL ER
Sbjct: 205 YATLGSFYIPLFVMIQVYYKIFCAARRIVLEER 237


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 419 RALEDSTVENNDETESLREVETKFKNQMK 505
           R  + ST+EN  ETES     TK K + K
Sbjct: 216 RKRKSSTIENESETES-NASSTKTKMRRK 243


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 NIGSQNNIDIEKHANNEKNNH 173
           N    N  + +K+ANN+KNN+
Sbjct: 428 NQNDNNQKNNKKNANNQKNNN 448


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 309 VSFPWLFICSSSFEAITSDFVQMIYQYY*N 220
           V F ++FI   + ++  SDF Q+I ++  N
Sbjct: 310 VPFNFMFIADLNNQSTASDFKQLIDRWVAN 339


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 530 FHIFINFLSSSDS*IWSP 477
           FH++IN     D+ I+SP
Sbjct: 363 FHLYINTAPCGDARIFSP 380


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +3

Query: 99  RKPENIGSQNNIDIEKHANNEKNNHVEEVDQN 194
           ++P+ I + N++    + NN  NN+    + N
Sbjct: 77  KEPKIISNNNSLSNNYNYNNNYNNYNNNYNTN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,821
Number of Sequences: 438
Number of extensions: 1650
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)