Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060414.seq
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zi...    29   2.0  
At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zi...    29   2.0  
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ...    28   3.6  
At1g73660.1 68414.m08530 protein kinase family protein contains ...    28   3.6  
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    28   4.7  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   4.7  
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911...    28   4.7  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    27   6.2  

>At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 647

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 457 NGKSERSGDQIQESDEDKKLMKMWKEV 537
           + K +++G+ IQ+ D D+KL+  WK +
Sbjct: 108 SSKRQKNGNPIQDCDHDEKLVYPWKGI 134


>At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 647

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 457 NGKSERSGDQIQESDEDKKLMKMWKEV 537
           + K +++G+ IQ+ D D+KL+  WK +
Sbjct: 108 SSKRQKNGNPIQDCDHDEKLVYPWKGI 134


>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
           subunit HAP3-related contains Pfam PF00808 :
           Histone-like transcription factor (CBF/NF-Y) and
           archaeal histone; similar to polymerase epsilon p17
           subunit (DNA polymerase epsilon subunit 3) (YB-like
           protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7)  [Mus
           musculus];
          Length = 275

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 108 ENIGSQNNID--IEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQN 254
           EN   + N D   E++ N+E+N   +E +   E   +   S N D S E+N
Sbjct: 196 ENGNDEENDDENTEENGNDEENEKEDEENSMEENGNESEESGNEDHSMEEN 246


>At1g73660.1 68414.m08530 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 1030

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 96  FRKPENIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDI 239
           F K  +I    + + E   +  K+NH + +D ++ +  + H SN+ +I
Sbjct: 36  FLKKLHISPNQSDEAEGSISTTKSNHHKSIDVSSSSSPRSHHSNSPEI 83


>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 108 ENIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSN 227
           E++GS NN   E+H ++E +   E V+++  +E+++   N
Sbjct: 111 EHVGSDNN---EEHGSDEDSERGEAVEESDSSEDEVPSRN 147


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 111 NIGSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSNNTDISSEQNLK 260
           N+G   +ID++K    EK   VE     ++T+  I   N  ++  E+N++
Sbjct: 391 NMGEDMDIDVDKKPEQEKTEIVELDSPVSKTQRVI--ENKQEVEEEENVE 438


>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
           Plant protein of unknown function (DUF869)
          Length = 982

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 117 GSQNNIDIEKHANNEKNNHVEEVDQNAETEEKIHRSN 227
           G   N++ E H  +EK NH E + +  E EE++ R+N
Sbjct: 813 GKIENLEDELH--DEKENHREALAKCQELEEQLQRNN 847


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 141 EKHANNEKNNHVEEVDQNAETEEKIHRSNNTDIS 242
           + H +  +   +   D  +E EEK  +S NTD S
Sbjct: 709 DDHKSYTREKEITNADHESEMEEKYKKSRNTDDS 742


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,504,292
Number of Sequences: 28952
Number of extensions: 97872
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)