Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060413.seq
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    53   3e-08
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   1.5  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   4.4  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   4.4  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 24/79 (30%), Positives = 44/79 (55%)
 Frame = +3

Query: 258 LREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFNCASAQDPNIK 437
           L+ QLL     +    +R K+CD ++E+AR+  D  G  +WPE +  +FN  ++ D + +
Sbjct: 99  LQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQG--EWPELINVIFNAVNSPDESFR 156

Query: 438 EAGIRMFTSVPGVFGNRQT 494
           E+  R  TS+P +   + +
Sbjct: 157 ESVFRTITSLPRLLSGQDS 175


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 114 CFCWNVVVCVLCL 76
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 4   HEGDQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHL-VNSIQNADIAEDVRQTA 180
           +EG  A  + L N+L  TD  +RSQ+      +  +   +HL +N +   +I+  +    
Sbjct: 418 NEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNISRHIDPKI 477

Query: 181 AVLLRR 198
             +L R
Sbjct: 478 LAMLGR 483


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 46  LLSTDNDIRSQAEDAYNNIP-TETKVVHLVNSIQNADIAE 162
           L S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 407 LCQCARSKHQRSWYSNVYVCTRCIWK 484
           LC+   S H RS+  ++ +C +C+ K
Sbjct: 245 LCKVLESSHLRSFAEDLSMCFKCVKK 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,712
Number of Sequences: 5004
Number of extensions: 44710
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)