Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060413.seq
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    51   7e-07
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    43   1e-04
06_01_0601 + 4337575-4340149,4340566-4340978                           31   0.64 
10_08_0616 + 19286014-19286928                                         29   3.4  
01_07_0224 - 42121011-42122486                                         28   6.0  
12_01_0750 - 6754126-6755248,6755331-6755791                           27   7.9  
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388...    27   7.9  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    27   7.9  

>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +3

Query: 222 VLPEIAI*AADVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFM 401
           V P ++      L++ LL  LQ D  + + +KVCD +SELA   + +   N W E L F+
Sbjct: 99  VWPHLSPAGQAALKQHLLSALQSDPPKPIAKKVCDAISELAALLLPE---NAWAELLPFL 155

Query: 402 FNCASAQD-PNIKEAGIRMF 458
           F  AS  + PN++E+ + +F
Sbjct: 156 FRAASGPEAPNLQESALLIF 175



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
 Frame = +1

Query: 10  GDQAQFYQLLNTLLSTDNDIRSQAEDAYNNIP---TETKVVHLVNSIQNADIAEDVRQTA 180
           GD A F  LL+TL+S+ N  R+ AE A++ +     E   + L +S+ +     D+R  A
Sbjct: 16  GDPAAFDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRAMA 75

Query: 181 AVLLRRLFS 207
           AVLLR+L S
Sbjct: 76  AVLLRKLLS 84


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 46/85 (54%)
 Frame = +3

Query: 228 PEIAI*AADVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFN 407
           P++   A   L++ L+ ++ +D S  +RR   +VVS +A+  +      +WPE L F+F 
Sbjct: 69  PKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPA---GEWPELLPFIFQ 125

Query: 408 CASAQDPNIKEAGIRMFTSVPGVFG 482
           C+ +   + +E  + +F+S+    G
Sbjct: 126 CSQSPQEDHREVALILFSSLTETIG 150



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 34  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 198
           LL   L  DND R QAE+    +  + +VV  LV+ ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRK 62


>06_01_0601 + 4337575-4340149,4340566-4340978
          Length = 995

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 339 LARNHIDD-DGNNQWPEFLQFMFNCASAQDPNIKEAGIRMFTSVPGVFGNRQTENL 503
           L+ NH    DGN     F   + NC    +  +  AG+     +P + GN  + NL
Sbjct: 247 LSHNHFSSSDGNTNLVPFFSSLVNCTGLLELGVASAGVG--GEIPAIIGNVSSANL 300


>10_08_0616 + 19286014-19286928
          Length = 304

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 16  QAQFYQLLNTLLSTDNDIRSQAEDAYNNIP 105
           Q++ Y+ +   +S DND     +DA NN+P
Sbjct: 124 QSKLYEEIKATMSGDNDDEINEDDARNNLP 153


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 336 ELARNHIDDDGNNQWPEFLQFMF 404
           +L    ++D G  +WP F+QF F
Sbjct: 7   DLGGGGVEDGGGKKWPGFVQFFF 29


>12_01_0750 - 6754126-6755248,6755331-6755791
          Length = 527

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 542 LVAKXILTCLLYXQVFSLTISKYTWY 465
           +V   +L+CLL+ QVF L++  Y  Y
Sbjct: 15  IVGSWLLSCLLHFQVFHLSLFPYPSY 40


>02_04_0624 +
           24538095-24538183,24538429-24538612,24538725-24538886,
           24538988-24539225,24539301-24539370,24539439-24539530,
           24539799-24539836,24540018-24540039,24540462-24540618,
           24540702-24540753,24542144-24542207,24542279-24542362,
           24543418-24543543,24543622-24543818,24543903-24544091,
           24544186-24544434,24544507-24544556,24544977-24545059,
           24545164-24545449,24545751-24545794,24545878-24546626
          Length = 1074

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 319 FVM*SLNWLGIILMTMATTSGLSSYSSCLTVPVRKIQT 432
           F++  L  +GI+      T+G+ S+ S  T   RKI++
Sbjct: 574 FLLKQLPGIGIVTAKALKTAGIDSFESLATADARKIES 611


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 34  LLNTLLSTDNDIRSQAEDAYNN 99
           LL TLLS D D+R  A DA N+
Sbjct: 375 LLETLLSIDPDMRGTATDALNS 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,668
Number of Sequences: 37544
Number of extensions: 282052
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)