Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060413.seq
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     88   4e-18
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   2.0  
SB_39862| Best HMM Match : PAN (HMM E-Value=0.24)                      29   3.5  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
 Frame = +3

Query: 252 DVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFNCASAQDPN 431
           ++++E LL  +  +    +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    
Sbjct: 56  NLMKESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAE 115

Query: 432 IKEAGIRMFTSVPGVFGNRQTENLXV*KAC*YXLCN-QTNQ 551
           +KE+ + +F S PGVFGN+Q   L V K   +   N QT+Q
Sbjct: 116 LKESALNIFCSFPGVFGNQQDHYLNVIKQMLWQCINDQTSQ 156



 Score = 27.9 bits (59), Expect(2) = 0.016
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 22 QFYQLLNTLLSTDNDIRSQAE 84
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 27.5 bits (58), Expect(2) = 0.016
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 163 DVRQTAAVLLRRLFSA 210
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 315 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFNCASAQDPN 431
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


>SB_39862| Best HMM Match : PAN (HMM E-Value=0.24)
          Length = 146

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +1

Query: 97  NIPTETKVVHL-VNSIQNADIAEDVRQTAAVLLRRLFSAXXXXXXXXXXXXQQTCSEN-- 267
           N  T T++  L  N++  A+I E V  + AV  + L                  C+ +  
Sbjct: 77  NYITNTRICELNSNAVSGAEIEELVSASGAVFTQILDQTVLGILKIICTHKSTRCTSDKK 136

Query: 268 NCYSPFK 288
           NCYSPF+
Sbjct: 137 NCYSPFR 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,532
Number of Sequences: 59808
Number of extensions: 328878
Number of successful extensions: 927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)