Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060413.seq
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    51   7e-07
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z50109-9|CAA90440.2|  367|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = +1

Query: 13  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 192
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 193 RRLFS 207
           RR+ +
Sbjct: 62  RRVLA 66



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 306 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFNCASAQDPNIKEAGIRMFTSVPGVFGN 485
           +++K+ D++SE+A N IDD G+  W   L+ M +C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 486 R 488
           R
Sbjct: 160 R 160


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +3

Query: 249  ADVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFNCASAQDP 428
            A+ + ++LL  L  D    +R   C  +S+L R H   + +   PE+L+ +         
Sbjct: 1116 ANEIAKELLPALT-DREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKE 1174

Query: 429  NIKEAGIRMFTSV 467
            +++EA  R   S+
Sbjct: 1175 SVREAADRAADSI 1187


>Z50109-9|CAA90440.2|  367|Caenorhabditis elegans Hypothetical
           protein C09H10.9 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +1

Query: 253 TCSENNCYSPFKWIFPSTYEERFVM*SLNWLGIILMTMATTSGLSSYSSCLTVPVRKIQT 432
           TCS +N +S  KWI    Y +  V   +N   I L+ + T +G +        P  K  T
Sbjct: 242 TCSYSNLHSFAKWIENFVYPD--VADHVNAFEISLIRI-TEAGTNKAQGVCKYPDNKFTT 298

Query: 433 SKKLVFECLRLYQ 471
            +  VF+ + L +
Sbjct: 299 IRTPVFQAMNLQE 311


>Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical
           protein F07D3.3 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 58  DNDIRSQAEDAYNNIPTETKVVHLVNSIQNAD 153
           D D   QA    NNIP E  V+H+  S +  D
Sbjct: 149 DQDECMQAVQELNNIPVEDSVIHMTISTRFID 180


>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 24  ILSVAKYFTFNR**YQIPSRGRIQQHSNRNKSSAPSEFNS 143
           +L V+K +T  +  YQ   R  + +HSN NKS    E ++
Sbjct: 108 LLDVSKVWTDVKVNYQDYLRNTLDEHSNSNKSDVLKEIDT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,083
Number of Sequences: 27780
Number of extensions: 254466
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)