Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060413.seq
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    57   7e-09
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    41   5e-04
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    36   0.014
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    30   1.2  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    27   6.6  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   6.6  
At2g17780.1 68415.m02059 expressed protein contains Pfam profile...    27   8.7  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
 Frame = +3

Query: 105 NRNKSSAPSEFNSKCRHCRRCASNG-GRAVTKII*CRIL*-----VLPEIAI*AADVLRE 266
           N  K S P   + K  H  + + +  GRA+  ++  ++L      + P +++     L+ 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 267 QLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFNCASAQDPNIKEAG 446
            +L  +Q + ++ + +K+CD VSELA   + ++G   WPE L F+F C ++  P ++E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 447 IRMFTSVPGVFGNRQTENL 503
             +   +    G   T ++
Sbjct: 164 FLILAQLSQYVGETLTPHI 182


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 43/76 (56%)
 Frame = +3

Query: 258 LREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFNCASAQDPNIK 437
           +++ L+ ++ ++ S  +RR   +VVS +A+  +      +WP+ L F+F C+ +   + +
Sbjct: 79  VKQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHR 135

Query: 438 EAGIRMFTSVPGVFGN 485
           E  + +F+S+    GN
Sbjct: 136 EVALILFSSLTETIGN 151



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 34  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 198
           LL   L  DND R QAED    +  + +VV  LV  ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRK 62


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 37  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAA 183
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 13  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVN 135
           D   FY L +T+L   N    +A  +Y N+ T+T  + L+N
Sbjct: 333 DFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 491 LTISKYTWYRRKHSNTSFFDV 429
           + +  + W+R++H+  +FFDV
Sbjct: 263 IAVGLFLWWRQRHNQNTFFDV 283


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 NRNKSSAPSEFNSKCRHCRRCASNGG 182
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


>At2g17780.1 68415.m02059 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 416

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 46  LLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 162
           LL+   +I +Q E A N I    K+V L+N   NA I E
Sbjct: 100 LLAMGWNIVNQFEKAQNEIDLFLKIVPLINMADNARIRE 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,957,782
Number of Sequences: 28952
Number of extensions: 230044
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)