Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060412.seq
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418...    40   0.002
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371           29   2.5  
02_03_0106 + 15292869-15296138                                         29   2.5  
07_03_0256 - 15875066-15877025,15877292-15877911                       28   5.8  
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764...    28   5.8  
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           28   7.7  

>04_03_0108 -
           11340504-11340680,11341580-11341665,11341784-11341827,
           11342339-11342428,11343762-11343928,11343986-11344010,
           11344636-11344797,11345376-11345422,11345926-11345985,
           11346094-11346465
          Length = 409

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 309 LDIVDAIPLFHHSHYVS--PMAEVALTQIETIAQSENRVIAGYYAA 440
           + I DA+PL HH H++   P  E+ALT +E    ++   + GYY A
Sbjct: 48  VSIADAVPLSHHPHHLPLLPTLELALTLVEDHFAAQGLAVVGYYHA 93


>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
          Length = 1165

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 419 DSRLLCSLRELRDNIVERCPGLKIAEKIV 505
           D   +C+L ++   IV+RC GL +A K++
Sbjct: 402 DESEICALEDIGMKIVDRCDGLPLAIKVI 430


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 416 CDSRLLCSLRELRDNIVERCPGLKIAEKIV 505
           C S  L SL+++   IVERC G  +A K+V
Sbjct: 350 CSSEELASLKDVGIKIVERCDGHPLAIKMV 379


>07_03_0256 - 15875066-15877025,15877292-15877911
          Length = 859

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 419 DSRLLCSLRELRDNIVERCPGLKIAEKIVEISLLL 523
           D R    LRE  +NI+ +C GL +A  I+ IS LL
Sbjct: 281 DERCPPQLREAANNILRKCGGLPLA--IISISSLL 313


>04_04_0256 +
           23974297-23974387,23974824-23974942,23975619-23976437,
           23976626-23976781,23976878-23977252
          Length = 519

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 356 LTNGRSSTHTD*NHCS----IRKPCDSRLLCSLRELRDNIVERCPGLKIAE 496
           L+N  +  H + NHC     ++ PC  + L SL     N+VE C GLK+ E
Sbjct: 240 LSNSLALEHLELNHCKGIICLKIPCTLQQLSSL-----NVVE-CSGLKVIE 284


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 404 IRKPCDSRLLCSLRELRDNIVERCP 478
           I + C S+  C + E  D+I  RCP
Sbjct: 283 IMQDCSSKFYCEICESEDHIATRCP 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,290
Number of Sequences: 37544
Number of extensions: 283599
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)