Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060412.seq
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665...    37   0.014
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ...    28   4.9  

>At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665:
           Uncharacterised protein family (UPF0172)
          Length = 208

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +3

Query: 240 TLCCEGVLLADAGKTKEGGRNQSLDIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRV 419
           T    GVL+       +G     ++I D++PLFH +  + P  E++L  IE    ++   
Sbjct: 30  TAAVNGVLVGRISPKDDG----VVEISDSVPLFHSNLALLPPLEISLIMIEEHYVAQGLS 85

Query: 420 IAGYYAACENF 452
           I GY+ A E F
Sbjct: 86  IVGYFHANERF 96


>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein contains Pfam
           profile PF02469: Fasciclin domain
          Length = 445

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 262 FLLMPERLRKVAGTKV*ISLMLYHYSTTAITSHQWPK-*HSHR 387
           FLL P  L+ +       SL+++H     ITS QWP   H HR
Sbjct: 94  FLLEPRNLKSLQ------SLLMFHILPKRITSPQWPSLSHHHR 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,217
Number of Sequences: 28952
Number of extensions: 235103
Number of successful extensions: 498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)