Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060411.seq
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.4  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.7  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +3

Query: 249  ENRHKNYLQTTMF-LQKPLF--LKDTN*RVGLVKLTSVKSY 362
            ++ HK ++Q  +  + K LF  LKDT    G++KLT V+S+
Sbjct: 1183 DSHHKLWIQDRLHDILKALFFILKDTPTDYGVLKLTEVRSF 1223


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 442 YATKNMSGNGNQVPLAPNQRGPG 510
           Y   N+S   N +PL  N +GPG
Sbjct: 398 YELVNVSSRSNSLPLKDNIKGPG 420


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 521 PWIRPGPRWLGASGT*FPFPLIFLVA*VSGHVY 423
           PW+    RWL  +G    FPL+ L++ + GHVY
Sbjct: 131 PWVMVLLRWL-RTGI---FPLLDLISALIGHVY 159


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 355 NHIPMCRMCPTIG*GDFTC 411
           NHIP C++C   G    TC
Sbjct: 294 NHIPKCKLCAQEGSSLVTC 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,374
Number of Sequences: 5004
Number of extensions: 48971
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)