Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060411.seq
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0101 + 14611622-14613133                                         28   4.5  
07_03_1697 - 28795521-28797328,28797430-28797550                       27   7.8  

>09_04_0101 + 14611622-14613133
          Length = 503

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 480 HLIPVSTHILGSIGIGTRIPLKVARKIALTDCRTHPAHRYMILLMST*QVPLFN 319
           HL  +  H+L S    +  P+ + R I+L +   H AHR ++ L S   + LFN
Sbjct: 21  HLRQIHAHLLTSGRFPSLGPVLLRRLISLPNPHLHLAHRLLLSLPSP-SLDLFN 73


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 430 CPDTYATKNMSGNGNQVPLAPNQRGPGL 513
           C  T   KN +GN  +V  AP+  G GL
Sbjct: 35  CGTTLRAKNRTGNSQEVISAPSSLGSGL 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,582
Number of Sequences: 37544
Number of extensions: 299389
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)