Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060411.seq
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)                    28   6.1  

>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 450  QEYEWKRESGAAGAQPTRARPYPRASTPHRPVECYHPT 563
            +E + KR +G A A+PTR+    R+ T   P E   PT
Sbjct: 1373 EEVQPKRATGKASAKPTRSTRGKRSQTDEAPAEGEKPT 1410


>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
          Length = 1366

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 326 SGTCQVDISKIIYLCAGC 379
           SG C ++I+K+IY C  C
Sbjct: 771 SGKCSINITKLIYECKSC 788


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,327
Number of Sequences: 59808
Number of extensions: 367249
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)