Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060411.seq
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 504 PALVGRQRHLIPVSTHILGSIGIGTRIPLKVAR----KIALTDCRTHPAHRYMILLMST* 337
           P L G+Q+  +   T ++GS+G  T    K+AR    KI L    +H      + L+   
Sbjct: 651 PYLEGKQQMTVFQRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESHEVRCTAVFLLMKT 710

Query: 336 QVPL 325
             PL
Sbjct: 711 NPPL 714


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 241 IPLKIVIKITCRLQCFYRNH 300
           +P  +++ I CRL C+ + H
Sbjct: 203 VPCIVMLGIYCRLYCYAQKH 222


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 330 GLVKLTSVKSYTYVPDVS 383
           G  KL ++KS +Y+P  S
Sbjct: 40  GYAKLAAIKSGSYIPGAS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,206
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)