Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060411.seq
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42280.1 68418.m05146 DC1 domain-containing protein contains ...    28   3.7  
At1g73480.1 68414.m08507 hydrolase, alpha/beta fold family prote...    28   3.7  
At1g49050.1 68414.m05500 aspartyl protease family protein contai...    28   3.7  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    28   5.0  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   8.7  

>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 694

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 308 EGYQLKSGTCQVDISKIIYLCAGCVLQSVRAILRATLSGIRVPIPMLPRI 457
           +G  LK   CQV + K+ Y C+ C     +  L AT S +R P P +  I
Sbjct: 206 DGNHLKCKCCQVPLQKVYYHCSIC-----KFYLNATCS-MRPPPPTISHI 249


>At1g73480.1 68414.m08507 hydrolase, alpha/beta fold family protein
           low similarity to monoglyceride lipase from [Homo
           sapiens] GI:14594904, [Mus musculus] GI:2632162;
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 463

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 481 PLAPNQRGP-GLIHGLQHHIGR 543
           PL+PN RG   L+HGL  H GR
Sbjct: 205 PLSPNHRGLIVLLHGLNEHSGR 226


>At1g49050.1 68414.m05500 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease; contains
           similarity to nucellin GI:2290203 from [Hordeum vulgare]
          Length = 583

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 291 QKPLFLKDTN*RVGLVKLTSVKSYTYVPDVSYNRL 395
           Q  L L   N RVG V   +  SYTY P+ +Y++L
Sbjct: 413 QGMLSLDGENGRVGKVLFDTGSSYTYFPNQAYSQL 447


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 308 EGYQLKSGTCQVDISKIIYLCAGC 379
           EG + K   C  D+ K+IY C  C
Sbjct: 231 EGKERKCYCCDDDLEKVIYCCVSC 254


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 308 EGYQLKSGTCQVDISKIIYLCAGC 379
           +G  LK   CQV + KI Y C+ C
Sbjct: 160 DGNHLKCKCCQVPLEKIYYHCSIC 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,570
Number of Sequences: 28952
Number of extensions: 247933
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)