Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060410.seq
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221...    29   3.3  

>05_07_0035 -
           27221338-27221433,27221510-27221599,27222056-27222115,
           27222231-27222523,27222601-27222757,27222917-27223261,
           27223890-27224020,27224119-27224596,27224817-27225563
          Length = 798

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 444 ATKXXSXNGNXVPLAPNQARGRPYXRASTPQRP 542
           A+   S  GN  P APN  RG P+ +   P  P
Sbjct: 43  ASSSSSSGGNRAPPAPNPTRGAPWLQKWGPTDP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,781,143
Number of Sequences: 37544
Number of extensions: 165888
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)