BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060409.seq (679 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q24246 Cluster: Dynein intermediate chain, cytosolic; n... 50 7e-05 UniRef50_Q5LLX9 Cluster: Sugar ABC transporter, permease protein... 34 2.8 UniRef50_Q86NP2 Cluster: Negative elongation factor A homolog; n... 33 4.8 UniRef50_UPI00001C4127 Cluster: PREDICTED: hypothetical protein;... 33 8.4 UniRef50_O67724 Cluster: N-acetyl-gamma-glutamyl-phosphate reduc... 33 8.4 >UniRef50_Q24246 Cluster: Dynein intermediate chain, cytosolic; n=55; Eumetazoa|Rep: Dynein intermediate chain, cytosolic - Drosophila melanogaster (Fruit fly) Length = 663 Score = 49.6 bits (113), Expect = 7e-05 Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = +2 Query: 299 DRKAELERKKAKLXXXXXXXXXXXXXXXXXXXXXXLQRASATSSLDS--RRDIDEMLSSL 472 DRKAELERKKAKL R + +D R+D+DEMLSSL Sbjct: 2 DRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSL 61 Query: 473 GVAPVKDV 496 GVAPV +V Sbjct: 62 GVAPVSEV 69 Score = 46.4 bits (105), Expect = 6e-04 Identities = 28/56 (50%), Positives = 36/56 (64%) Frame = +1 Query: 511 SMTSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIPAKETVIY 678 SMTS T +PDASL +A++ Q G KKQP L V VQ+T+IP KET++Y Sbjct: 78 SMTS-DNSNTQTPDASL----QATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVY 128 >UniRef50_Q5LLX9 Cluster: Sugar ABC transporter, permease protein; n=2; Rhodobacteraceae|Rep: Sugar ABC transporter, permease protein - Silicibacter pomeroyi Length = 285 Score = 34.3 bits (75), Expect = 2.8 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -3 Query: 425 MWPMPVAVLLQHLSVLFLCGADLYPLLW 342 M P P A+ L++L VL C LYPLLW Sbjct: 1 MKPSPGALALKYLFVLLACAVVLYPLLW 28 >UniRef50_Q86NP2 Cluster: Negative elongation factor A homolog; n=3; Eumetazoa|Rep: Negative elongation factor A homolog - Drosophila melanogaster (Fruit fly) Length = 1251 Score = 33.5 bits (73), Expect = 4.8 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +1 Query: 508 TSMTSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIPAK 663 TS TS Q +P+A LP T +Q+Q ++QPQ+ Q QS P + Sbjct: 1101 TSTTSGGQGQQGNPNAGLPRT--VQVQVQAQQQQQPQQQQATQQQSQQAPQR 1150 >UniRef50_UPI00001C4127 Cluster: PREDICTED: hypothetical protein; n=1; Mus musculus|Rep: PREDICTED: hypothetical protein - Mus musculus Length = 198 Score = 32.7 bits (71), Expect = 8.4 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +1 Query: 505 FTSMTSLSPPQ--TASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIP 657 +TS+ ++SPP T +P ++ P + ASL G P +P QST++P Sbjct: 69 YTSLETISPPDSTTPNPGSASPDPETASLPTSGFPSSEPTTTS----QSTNLP 117 >UniRef50_O67724 Cluster: N-acetyl-gamma-glutamyl-phosphate reductase; n=1; Aquifex aeolicus|Rep: N-acetyl-gamma-glutamyl-phosphate reductase - Aquifex aeolicus Length = 340 Score = 32.7 bits (71), Expect = 8.4 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +1 Query: 85 LISKGTASKKHRIYEPF-AKIFVSELEFIEHPVTHHLFATFC 207 LIS+ KK R PF + ++SE+EF+E PV + A C Sbjct: 35 LISQSYKGKKVREVLPFFSNTYISEIEFLEEPVEDYELAFLC 76 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 595,977,650 Number of Sequences: 1657284 Number of extensions: 11057942 Number of successful extensions: 29087 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 28214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 29082 length of database: 575,637,011 effective HSP length: 98 effective length of database: 413,223,179 effective search space used: 52479343733 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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