Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24246 Cluster: Dynein intermediate chain, cytosolic; n...    50   7e-05
UniRef50_Q5LLX9 Cluster: Sugar ABC transporter, permease protein...    34   2.8  
UniRef50_Q86NP2 Cluster: Negative elongation factor A homolog; n...    33   4.8  
UniRef50_UPI00001C4127 Cluster: PREDICTED: hypothetical protein;...    33   8.4  
UniRef50_O67724 Cluster: N-acetyl-gamma-glutamyl-phosphate reduc...    33   8.4  

>UniRef50_Q24246 Cluster: Dynein intermediate chain, cytosolic;
           n=55; Eumetazoa|Rep: Dynein intermediate chain,
           cytosolic - Drosophila melanogaster (Fruit fly)
          Length = 663

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 299 DRKAELERKKAKLXXXXXXXXXXXXXXXXXXXXXXLQRASATSSLDS--RRDIDEMLSSL 472
           DRKAELERKKAKL                        R    + +D   R+D+DEMLSSL
Sbjct: 2   DRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSL 61

Query: 473 GVAPVKDV 496
           GVAPV +V
Sbjct: 62  GVAPVSEV 69



 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 28/56 (50%), Positives = 36/56 (64%)
 Frame = +1

Query: 511 SMTSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIPAKETVIY 678
           SMTS     T +PDASL    +A++  Q G KKQP  L V  VQ+T+IP KET++Y
Sbjct: 78  SMTS-DNSNTQTPDASL----QATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVY 128


>UniRef50_Q5LLX9 Cluster: Sugar ABC transporter, permease protein;
           n=2; Rhodobacteraceae|Rep: Sugar ABC transporter,
           permease protein - Silicibacter pomeroyi
          Length = 285

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 425 MWPMPVAVLLQHLSVLFLCGADLYPLLW 342
           M P P A+ L++L VL  C   LYPLLW
Sbjct: 1   MKPSPGALALKYLFVLLACAVVLYPLLW 28


>UniRef50_Q86NP2 Cluster: Negative elongation factor A homolog; n=3;
            Eumetazoa|Rep: Negative elongation factor A homolog -
            Drosophila melanogaster (Fruit fly)
          Length = 1251

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 508  TSMTSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIPAK 663
            TS TS    Q  +P+A LP T    +Q+Q   ++QPQ+ Q    QS   P +
Sbjct: 1101 TSTTSGGQGQQGNPNAGLPRT--VQVQVQAQQQQQPQQQQATQQQSQQAPQR 1150


>UniRef50_UPI00001C4127 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 198

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 505 FTSMTSLSPPQ--TASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIP 657
           +TS+ ++SPP   T +P ++ P  + ASL   G P  +P        QST++P
Sbjct: 69  YTSLETISPPDSTTPNPGSASPDPETASLPTSGFPSSEPTTTS----QSTNLP 117


>UniRef50_O67724 Cluster: N-acetyl-gamma-glutamyl-phosphate
           reductase; n=1; Aquifex aeolicus|Rep:
           N-acetyl-gamma-glutamyl-phosphate reductase - Aquifex
           aeolicus
          Length = 340

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 85  LISKGTASKKHRIYEPF-AKIFVSELEFIEHPVTHHLFATFC 207
           LIS+    KK R   PF +  ++SE+EF+E PV  +  A  C
Sbjct: 35  LISQSYKGKKVREVLPFFSNTYISEIEFLEEPVEDYELAFLC 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,977,650
Number of Sequences: 1657284
Number of extensions: 11057942
Number of successful extensions: 29087
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29082
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)