Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   1.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   3.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   4.4  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   7.6  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -1

Query: 622 ILEVASLDRLAIVGWLYLYAVNWHLERLSEVETVKS 515
           IL  +++   +++ W ++Y  +WH+ER  +V +V+S
Sbjct: 508 ILRKSAITSFSVL-WDFIYETSWHIERWLKVFSVQS 542


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 73   NCRINFNKSIQEHCRSD 23
            +CR  F K+IQ+HC +D
Sbjct: 1776 DCRSKFVKTIQQHCSAD 1792


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 225 YRIKMPTERGKQMMSNGMFNEF*FRNEDLSERF 127
           +R+  PT R +Q +  G    F   +EDL E F
Sbjct: 320 HRLSTPTSRKRQTLEKGHIKAFSAVDEDLDEIF 352


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 340 RHKRG*RSAPQRKRTERC*RSTATGIGHI*PGQSS*H 450
           R  RG  SAP+R++     ++TAT I H    +SS H
Sbjct: 221 RSSRGRSSAPKRRKDSGSSKTTATYIPHNPSKKSSQH 257


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 404 VLLQHLSVLFLCGADLYPLLWRGAS 330
           +++QHLS++F C  D  PL  + AS
Sbjct: 285 LIVQHLSLVFRCSDDPMPLYEKLAS 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,339
Number of Sequences: 5004
Number of extensions: 46546
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)