Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0521 + 21724447-21724594,21724795-21725342                       29   2.6  
05_04_0360 - 20617865-20619799                                         29   4.5  
01_06_0945 + 33217310-33217427,33218820-33219433                       29   4.5  
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512...    28   6.0  
02_05_0720 - 31213391-31213617,31213724-31213772,31213898-312140...    28   6.0  

>06_03_0521 + 21724447-21724594,21724795-21725342
          Length = 231

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 493 CPLFFTSMTSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQV 630
           C L F    + SPP    P+  LP       Q +G P+ +PQ+L +
Sbjct: 5   CALGFAGAVASSPPNPIKPNYDLPRR-----QPEGRPRTEPQDLLI 45


>05_04_0360 - 20617865-20619799
          Length = 644

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 408 NGHRPHLAWTVVVTLTRCCPR-LEWLQLRMSSLLYINDFTVSTSDSLSRCQFTAYR*SQP 584
           +G RP L W    ++     + LE+L   +   +Y  D  +  ++ L      A R +  
Sbjct: 413 DGKRPALTWAQRRSIIMDVAKGLEYLHYGVKPAIYHRD--IKATNILLDGDMRA-RVADF 469

Query: 585 TIARRSKEATSRITSSLRAVHGH 653
            +ARRS+E  S +T+ +   HG+
Sbjct: 470 GLARRSREGQSHLTTRVAGTHGY 492


>01_06_0945 + 33217310-33217427,33218820-33219433
          Length = 243

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 582 PTIARRSKEATSRITSSLRAVHGHTGQGDGDL 677
           P+  RR  + T+ +T++   +HGH G  DG L
Sbjct: 184 PSPRRRVDDGTALLTAASNRLHGHVGVHDGIL 215


>07_03_0463 -
           18449908-18450171,18450718-18450810,18451170-18451254,
           18451607-18451705,18452099-18452238,18453036-18453482
          Length = 375

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 591 ARRSKEATSRITSSLRAVHGHT--GQGDGD 674
           ARR +EA  R+  +++ +H H   G GDGD
Sbjct: 47  ARRLREAEERLREAIQELHRHQHGGGGDGD 76


>02_05_0720 -
           31213391-31213617,31213724-31213772,31213898-31214076,
           31215861-31216110
          Length = 234

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 589 LQGGPKKQPQELQVVFVQSTDIPAKETVI 675
           ++G P+  P++++V  ++  D+ AKET++
Sbjct: 182 IKGDPELDPRDMKVPELRDCDVEAKETIV 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,421
Number of Sequences: 37544
Number of extensions: 311003
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)