Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9054| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.49 
SB_38530| Best HMM Match : TPR_1 (HMM E-Value=3.4e-32)                 31   1.1  
SB_9554| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_52871| Best HMM Match : Cyanate_lyase (HMM E-Value=7.8)             31   1.1  
SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)                    29   2.6  
SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)                 29   2.6  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)         28   6.0  
SB_46726| Best HMM Match : TROVE (HMM E-Value=0)                       28   8.0  
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)               28   8.0  
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         28   8.0  

>SB_9054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIPAKETVI 675
           P   S D + P T   + Q  GG + QPQ   Q    Q+T IP +   I
Sbjct: 62  PSENSEDGNFPETSSTNSQATGGTQNQPQLPTQAPMSQATGIPQESDAI 110


>SB_38530| Best HMM Match : TPR_1 (HMM E-Value=3.4e-32)
          Length = 803

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIPAKETVI 675
           P   S D + P T   + +  GG + QPQ   Q    Q+T IP +   I
Sbjct: 459 PSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIPQESDAI 507


>SB_9554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIPAKETVI 675
           P   S D + P T   + +  GG + QPQ   Q    Q+T IP +   I
Sbjct: 62  PSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIPQESDAI 110


>SB_52871| Best HMM Match : Cyanate_lyase (HMM E-Value=7.8)
          Length = 346

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIPAKETVI 675
           P   S D + P T   + +  GG + QPQ   Q    Q+T IP +   I
Sbjct: 62  PSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIPQESDAI 110


>SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIPAKETVI 675
           P   S D   P T   + +  GG + QPQ   Q    Q+T IP +   I
Sbjct: 62  PSENSEDGDFPETSSTNSEATGGTQNQPQLSTQAPMSQATGIPQESDAI 110


>SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIPAKETVI 675
           P   S D + P T   + +  GG + QPQ   Q    Q+T IP +   I
Sbjct: 497 PSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIPQESDAI 545


>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 293 MSDRKAELERKKAKL 337
           MSDRKAELERK+ KL
Sbjct: 1   MSDRKAELERKRKKL 15


>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
          Length = 293

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 384 RKMLKKHCNGHRPHLAWTVVVTLTRCCPRLEWLQLRMSSLLY 509
           R++L  +CNGH  H+  +++  L      L+W   R++SLLY
Sbjct: 178 RRILASYCNGH-THIHTSLLYRLVYTGEVLQWTH-RLTSLLY 217


>SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 532 PQTASPDASLPHTDKASLQLQGGPKKQPQ-ELQVVFVQSTDIP 657
           P   S D + P T   + +  GG + QPQ   Q    Q+T IP
Sbjct: 398 PSENSEDGNFPETSSTNSEATGGTQNQPQLPTQAPMSQATGIP 440


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 517 TSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQVVFVQSTDIPAKETV 672
           TS + P  ASP +S    +  ++  Q GP + P   ++   Q    P + TV
Sbjct: 194 TSPTSPNNASPQSSTRPGETTAIPKQTGPTQPPGSTKITTPQHETKPGETTV 245


>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
          Length = 147

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 457 DAVLAWSGSS*GCPLFFTSMTSLSPPQTASPDASLPHTDKASLQLQGGPKKQPQELQV 630
           D  L W G +     +  + T  SP +   PD +L +    S++L GGP+    +L V
Sbjct: 4   DVFLKWRGEA----KYQVTKTRFSPQEIWVPDVALINNADKSVRLAGGPELFKTDLNV 57


>SB_46726| Best HMM Match : TROVE (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 502 REDILNWSHSKRGQHLVNVTTTVQARCG 419
           R+ I NW  SK+G++L N  T  + R G
Sbjct: 160 RKGIANWYDSKKGKNLANHVTKYKQRNG 187


>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
          Length = 640

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 338 GASPFFAPTQPSDLTCSTSW 279
           GA P  APTQP   T S +W
Sbjct: 170 GAKPLVAPTQPESKTESNNW 189


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 538 SEVETVKSLM*RREDILNWSHSKRGQHLVNVTTTVQARCGRC 413
           S+V T   L+  R+DI   SH K+ QH+V      + R G C
Sbjct: 690 SDVRTHILLLGNRQDIGRDSHEKQPQHIVGSLWERRIRGGLC 731


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,137
Number of Sequences: 59808
Number of extensions: 354683
Number of successful extensions: 938
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)