Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    29   4.0  
Z68215-14|CAL49436.1|  394|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z68215-13|CAL49435.1|  382|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z68215-12|CAA92455.2|  368|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z68215-10|CAC42269.1|  399|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z68215-9|CAC42270.1|  384|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AM231684-1|CAJ77753.1|  384|Caenorhabditis elegans GDP-mannose 4...    28   5.3  
AM231683-1|CAJ77752.1|  399|Caenorhabditis elegans GDP-mannose 4...    28   5.3  

>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 541 ASPDASLPHTDKASLQLQGGPKKQPQELQV 630
           A+P +SLP TD  +  +   PKK+P+E++V
Sbjct: 349 ATPSSSLP-TDIENKAVISSPKKEPEEIEV 377


>Z68215-14|CAL49436.1|  394|Caenorhabditis elegans Hypothetical
           protein C53B4.7e protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 63  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 107


>Z68215-13|CAL49435.1|  382|Caenorhabditis elegans Hypothetical
           protein C53B4.7d protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 51  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 95


>Z68215-12|CAA92455.2|  368|Caenorhabditis elegans Hypothetical
           protein C53B4.7c protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 37  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 81


>Z68215-10|CAC42269.1|  399|Caenorhabditis elegans Hypothetical
           protein C53B4.7b protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 68  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 112


>Z68215-9|CAC42270.1|  384|Caenorhabditis elegans Hypothetical
           protein C53B4.7a protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 53  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 97


>Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical
           protein C03C10.3 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 150 NEDLSERFINSVFFRSCSFTYQ*FRIIVE*ISINQYKNIVD 28
           NE+L ERF N V      F Y  F+I +E I    Y  +++
Sbjct: 134 NENLCERFSNEVQVSEARFFYG-FQIAIENIHSEMYSKLIE 173


>AM231684-1|CAJ77753.1|  384|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 53  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 97


>AM231683-1|CAJ77752.1|  399|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  ELLISKGTASKKHRIYEPFAKIFVSELEFI-EHPVTHHLFATFCRHF 216
           ELL+SKG   K H I    +    + +E +  +P+THH  ++F  H+
Sbjct: 68  ELLLSKGY--KVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHY 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,833
Number of Sequences: 27780
Number of extensions: 269975
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)