Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 426 LAWTVVVTLTRCCPRLEWLQLRMSSLLYI 512
           LAW      TRC  R++W +L++    Y+
Sbjct: 118 LAWR---NATRCIGRIQWSKLQVFDCRYV 143


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 309 LSWSEKRRSSAP*ERIKIGAAEKKNRKMLKKH 404
           +SW +  R+  P ER+ +   ++ N  ++ +H
Sbjct: 643 ISWLKDGRAMGPSERVHVTNMDQYNSILMIEH 674


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 132 RFINSVFFRSCSFTY 88
           RF+   F  SCSF Y
Sbjct: 187 RFVPEGFLTSCSFDY 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,071
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)