Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060409.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    28   4.9  
At1g55590.1 68414.m06363 F-box family protein  ; similar to SKP1...    28   6.5  
At1g13250.1 68414.m01538 glycosyl transferase family 8 protein c...    28   6.5  

>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 419 PMPVAVLLQHLSVLFLCGADLYPLLWRGASPFF---APTQPSDLTCSTSW 279
           P+P+  L   +  +FL  ADL+ L   G   FF   AP+    L  S SW
Sbjct: 470 PLPITFLWVAIQYVFLGSADLFTL--AGMMEFFFTEAPSTMRSLATSLSW 517


>At1g55590.1 68414.m06363 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 607

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 411 GHRPHLAWTVVVTLTRCCPRLEWLQLRMSSLLYINDFTVST 533
           GH P ++   + T+T CC  L  L +R  S  ++ D ++ +
Sbjct: 476 GHMPGISDRAIHTITHCCKALTELSIR--SCFHVTDSSIES 514


>At1g13250.1 68414.m01538 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 345

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = +1

Query: 109 KKHRIYE-----PFAKIFVSELEFIEHPVTHH 189
           K+HRIYE     PF  +F  ++E +EH    H
Sbjct: 253 KRHRIYELGSLPPFLLVFAGDVEPVEHRWNQH 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,446
Number of Sequences: 28952
Number of extensions: 245329
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)