Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060408.seq
         (448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.57 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   2.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   2.3  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    20   9.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   9.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    20   9.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 378 CYLVVVLRKLVEHIRVQLFLFPLLFLYCSSTDYY--LIGCC-FVRGSISIIF 232
           C L+++L     +    LF   LL L C    YY  L+ CC F+  ++ ++F
Sbjct: 230 CVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLF 281


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 233 FGSLLVPNLLLPVRA 189
           F S+L+P+ LLPV A
Sbjct: 126 FLSILIPHFLLPVAA 140


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 233 FGSLLVPNLLLPVRA 189
           F S+L+P+ LLPV A
Sbjct: 126 FLSILIPHFLLPVAA 140


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 300 YCSSTDYYLIGCCFVRGSISIIFW 229
           +  S  YYLI      G I II W
Sbjct: 63  FVRSMGYYLIQIYIPSGLIVIISW 86


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 198 WEKQIWH 218
           WE Q+WH
Sbjct: 45  WEPQMWH 51


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 198 WEKQIWH 218
           WE Q+WH
Sbjct: 45  WEPQMWH 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,958
Number of Sequences: 336
Number of extensions: 1574
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)